Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B13
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    32   0.47 
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    32   0.47 
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    32   0.47 
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    32   0.47 
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    29   4.4  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    29   4.4  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   5.8  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protei...    28   7.7  
U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protei...    28   7.7  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    28   7.7  
AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen prot...    28   7.7  

>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = -2

Query: 674 GNPXSPLGGGXTXSPXXKAGGXGXXGGXTGXGPKXQXPXPXGXAXXLSRKXXPXXPPDP 498
           G P  P G      P    G  G   G +G GP    P P G A        P  P +P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG-PPGPAGPAGNDGAPGAPGGPGEP 209


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = -2

Query: 674 GNPXSPLGGGXTXSPXXKAGGXGXXGGXTGXGPKXQXPXPXGXAXXLSRKXXPXXPPDP 498
           G P  P G      P    G  G   G +G GP    P P G A        P  P +P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG-PPGPAGPAGNDGAPGAPGGPGEP 209


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = -2

Query: 674 GNPXSPLGGGXTXSPXXKAGGXGXXGGXTGXGPKXQXPXPXGXAXXLSRKXXPXXPPDP 498
           G P  P G      P    G  G   G +G GP    P P G A        P  P +P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG-PPGPAGPAGNDGAPGAPGGPGEP 209


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = -2

Query: 674 GNPXSPLGGGXTXSPXXKAGGXGXXGGXTGXGPKXQXPXPXGXAXXLSRKXXPXXPPDP 498
           G P  P G      P    G  G   G +G GP    P P G A        P  P +P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAG-PPGPAGPAGNDGAPGAPGGPGEP 209


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
 Frame = -2

Query: 689 PPXXXGNPXSPLGGGXTXSPXXKA-GGXGXXGGXTGXGPKXQXPXPXGXAXXLSRKXXPX 513
           PP   GNP +P   G   SP  ++    G  G     GP      P G +        P 
Sbjct: 144 PPGPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGAPGGGSG--PGPAGPA 201

Query: 512 XPPDPE 495
            PP P+
Sbjct: 202 GPPGPD 207


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
 Frame = -2

Query: 689 PPXXXGNPXSPLGGGXTXSPXXKA-GGXGXXGGXTGXGPKXQXPXPXGXAXXLSRKXXPX 513
           PP   GNP +P   G   SP  ++    G  G     GP      P G +        P 
Sbjct: 144 PPGPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGAPGGGSG--PGPAGPA 201

Query: 512 XPPDPE 495
            PP P+
Sbjct: 202 GPPGPD 207


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = -2

Query: 668 PXSPLGGGXTXSPXXKAGGXGXXGGXTGXGPKXQXPXPXGXAXXLSRKXXPXXPPDP 498
           P  P GG     P   AG  G      G GP    P P G A        P  P  P
Sbjct: 179 PAGPAGGPGPAGPPGPAGADGNTPSGGGEGPAG-PPGPPGPAGNPGTDGAPGNPGAP 234


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +1

Query: 577 GPXPVXPPXNPXPPA-FXXGEXVXPPPRGEXGFPXKXG 687
           GP P  PP  P PP     G    P P G  G P   G
Sbjct: 250 GPGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGPPGNDG 287


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 580 PXPVXPPXNPXPPAFXXGEXVXPPP 654
           P PV PP  P P  F     + PPP
Sbjct: 50  PMPVCPPPPPCPAQFCPPPPICPPP 74


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
 Frame = -2

Query: 689 PPXXXGNPX--SPLGGGXTXSPXXKAGGXGXXGGXTGXGPKXQXPXPXGXAXXLSRKXXP 516
           P    G+P   SP G      P   AG  G  G     GP  +   P   A   +    P
Sbjct: 173 PDGEAGSPAAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGP 232

Query: 515 XXPPDPE 495
             PP P+
Sbjct: 233 AGPPGPD 239


>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
           protein R08B4.1a protein.
          Length = 1137

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -2

Query: 674 GNPXSPLGGGXTXSPXXKAGGXGXXGGXTGXG 579
           G P    GGG   S     GG G  GG  G G
Sbjct: 780 GGPTGSSGGGGGGSNSNSGGGGGNGGGGNGGG 811


>U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protein
           43 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +1

Query: 580 PXPVXPPXNPXP--PAFXXGEXVXPPPRGEXGFPXKXGGXP 696
           P P  P  +P P  PA   G+   P P G+ G P + G  P
Sbjct: 246 PGPPGPKGSPGPDGPAGVDGQAGPPGPPGQAGTPGEKGICP 286


>U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protein
           145 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 577 GPXPVXPPXNPXPPAFXXGEXVXPPPRGEXGFPXKXG 687
           GP     P  P  PA   G+   P  RG  GFP   G
Sbjct: 150 GPAGPAGPSGPAGPAGPDGQPGFPGQRGNDGFPGAPG 186


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = -2

Query: 689 PPXXXGNPXSPLGGGXTXSPXXKAGGXGXXGGXTGXGPKXQXPXP 555
           PP   GN  +P GGG    P    G  G  G     GP  Q   P
Sbjct: 263 PPGPPGNNGAP-GGGYGVGPPGPPGPSGRPGAPGQPGPDGQPGAP 306


>AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen
           protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +1

Query: 580 PXPVXPPXNPXP--PAFXXGEXVXPPPRGEXGFPXKXGGXP 696
           P P  P  +P P  PA   G+   P P G+ G P + G  P
Sbjct: 246 PGPPGPKGSPGPDGPAGVDGQAGPPGPPGQAGTPGEKGICP 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,878,563
Number of Sequences: 27780
Number of extensions: 181621
Number of successful extensions: 682
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)