Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B12
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    31   0.23 
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   8.5  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    26   8.5  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   8.5  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 549 PGPWIPSRSQPSGHTLRKSSSTMSTQRNKLS 641
           P P + S+S   G+TL++S+S+ ST   K+S
Sbjct: 255 PKPHLSSKSSSQGNTLQRSTSSFSTPNRKVS 285


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 193 QKAHLAAFKIKSDNYLRRVLANPPEPPKIN 282
           Q +  + FK  S++YL + ++  PE P++N
Sbjct: 72  QSSTESLFKADSEDYLCKKVSKGPESPRVN 101


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 579 PSGHTLRKSSSTMSTQRNKLSLLQLQLHTNIVKVLLA 689
           PS   L+KS +T ST+     L QLQ     +++LLA
Sbjct: 406 PSHSLLQKSKNTSSTKALTSHLEQLQQENQQLRMLLA 442


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 209 LLSK*NPIIISEGY*PIHLNRPRLTGLCTNRLYLFL 316
           LL   NPI  S      HLN+  +T LC N    FL
Sbjct: 259 LLVNLNPIYFSTARRFEHLNKSLITTLCLNNYLSFL 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,432
Number of Sequences: 5004
Number of extensions: 72011
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)