Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B12
         (913 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0448 - 3444608-3444814,3446419-3446497,3446567-3446691,344...    31   1.3  
02_05_1351 - 35855543-35856751                                         29   3.9  
08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261...    29   5.1  
03_06_0713 - 35687672-35689219                                         29   5.1  
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43...    29   6.8  
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094...    29   6.8  
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278...    29   6.8  

>03_01_0448 -
           3444608-3444814,3446419-3446497,3446567-3446691,
           3446765-3446809,3447070-3447165,3447344-3447417,
           3447526-3447649,3447975-3448109,3448206-3448535,
           3448610-3448762,3448840-3449391,3449569-3449648,
           3450395-3450506,3450579-3450749,3450820-3450879
          Length = 780

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 402 VESSQECHRRVYPRVQCQHCILPKRNQCNQGPTAV*PDDHGRLL*CP 542
           +E S+ C   +  R+ C+H + PKR    +G     PD   R L CP
Sbjct: 34  IEDSEYCGEELGTRLTCRHGLTPKRRTAWEG-----PDTGRRFLGCP 75


>02_05_1351 - 35855543-35856751
          Length = 402

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 422 PSTRLSKSPMPTLHPTKKKSMQPRPY 499
           PS  +  +P+P +HP+   S  P PY
Sbjct: 179 PSPPIPATPLPRVHPSSSSSPSPSPY 204


>08_02_0818 -
           21524539-21524664,21524911-21524961,21525800-21526170,
           21526497-21526852,21527926-21527996
          Length = 324

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 374 TLRRHL*NRS-GIKSRMPSTRLSKSPMPTLHPTKKKSMQPRP 496
           T R H  +R+ G ++R+P  R ++ P P   P+++ S   +P
Sbjct: 56  TARGHSVHRAQGFEARLPPLRSARLPSPEAEPSRRSSAAEKP 97


>03_06_0713 - 35687672-35689219
          Length = 515

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +1

Query: 412 VKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHPDLALGSH-QEANLLA 588
           +++ ++  +  +NA I  Y  +   + ALL ++ MTM D      +  + +H Q+  +L 
Sbjct: 306 IRHGLETELSVANALIRMYSDKNEQSHALLVFESMTMRDLQSW--NAIISAHLQDYRILM 363

Query: 589 THSGRAARLCRPRETSSAYYSCSC 660
                     RP ET+ A    +C
Sbjct: 364 IFRRMVDSGMRPDETTFALVFSAC 387


>12_01_0053 -
           438527-438670,439038-439247,439401-439530,439672-439842,
           440233-440355,440439-440543,440656-441332,441498-441604,
           441970-442177,442178-442245,444209-444411,444580-444663,
           444780-445109,445238-445438,445667-445744,446236-446306
          Length = 969

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
 Frame = +1

Query: 337 KQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESN--ANIASYQKEINATKALL-PY 507
           +Q    ++  PAD Q  + + Q    K ++D  +++      +    + +   +A+  P 
Sbjct: 91  EQLVGAQLEAPADQQNPVEQHQDEDDKLSLDNLLEQHRWEGALQRLMRMVRNGEAINGPV 150

Query: 508 DQMTMEDFYDAHPDLALGSHQEANLLATHSGRAARLCR 621
                +D Y AHP++ +    E  L    SG AA   R
Sbjct: 151 PDAPPQDIYVAHPEIVILLMAEEYLRLMRSGNAAAAMR 188


>08_02_0270 + 15108178-15108587,15108678-15108774,15109445-15109492,
            15109583-15109806,15111367-15111463,15111556-15111651,
            15112297-15112544,15112632-15112715,15112787-15113236,
            15114880-15115024,15115116-15115217,15115677-15115769,
            15117308-15117349,15119085-15119113,15119210-15119251,
            15119922-15119997,15120764-15120835,15121208-15121326,
            15121428-15121491,15121576-15123009
          Length = 1323

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 427  DAFIQESNANIASYQKEINATKA-LLPYDQMTMEDFYDAHPDLALGSH 567
            DAF  E    +A  + ++ + ++ +   DQ+++ D  DAH DL +  H
Sbjct: 940  DAFPPEKLVEVAYEEMKVASNRSSMYQSDQISVHDERDAHSDLPMSRH 987


>03_05_0448 -
           24426509-24426737,24427306-24427401,24427723-24427847,
           24428694-24428846,24429921-24430247,24431415-24431630,
           24431768-24432112,24433897-24434253
          Length = 615

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +3

Query: 540 PS*PGPWIPSRSQPSG--HTLRK---SSSTMSTQRNKLSLLQLQL 659
           PS    W+P R++P+G  H+++K    + T   + N L L Q+QL
Sbjct: 47  PSLTVQWLPDRAEPAGKDHSVQKMVLGTHTSDNEPNYLMLAQVQL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,147,151
Number of Sequences: 37544
Number of extensions: 499249
Number of successful extensions: 1382
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)