Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B12
(913 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75526-1|CAA99772.1| 191|Caenorhabditis elegans Hypothetical pr... 73 3e-13
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical ... 30 2.0
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z12017-9|CAA78053.1| 537|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z11505-11|CAA77591.1| 537|Caenorhabditis elegans Hypothetical p... 29 4.6
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 29 4.6
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 29 4.6
Z69360-6|CAA93282.1| 599|Caenorhabditis elegans Hypothetical pr... 28 8.1
>Z75526-1|CAA99772.1| 191|Caenorhabditis elegans Hypothetical
protein C06H2.1 protein.
Length = 191
Score = 72.9 bits (171), Expect = 3e-13
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Frame = +1
Query: 130 AKRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVP 309
AKR++ S+VNW+ LAER+ E A L K S + V P + PKI++A K+A+P
Sbjct: 5 AKRVATSSVNWSKLAERLVPEHAAELTRVKGVSGTFQSAVSQLPADLPKIDFAALKKALP 64
Query: 310 I-PGMVDTFQKQYEALKIPYPADTQTALVE-SQWNQVKNAIDAFIQESNANIASYQKEIN 483
++D+ QKQYE++KIPY L E QW NA + A+ K++
Sbjct: 65 AHSAVLDSLQKQYESVKIPYGEVPAEYLKEVDQWVDYNNARIKLHEVKVADGLQEAKKVE 124
Query: 484 ATKALLP----YDQMTMEDFYDAH 543
A P +D+ +++ AH
Sbjct: 125 EKWAKAPPVEHFDRQHFVEYFPAH 148
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 376 TQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHPDLA 555
+ T ++ +W QV + + +F+ + + + + +N T +PY +MT F P L
Sbjct: 709 SSTDQLDPEWTQVTSLLKSFVYKRHTEPGT--EVLNNT---IPYHRMTDTVFLLVPPTLT 763
Query: 556 LGSHQEA 576
G HQ A
Sbjct: 764 FGDHQRA 770
>AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical
protein M57.2 protein.
Length = 580
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/77 (22%), Positives = 36/77 (46%)
Frame = +1
Query: 142 SQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGM 321
+++ W A + P + + ++ SD LR V +NP + I+W + +
Sbjct: 299 TENTTGWRAFSSTSPNPTSSRV--WQYLSDTPLRVVTSNPTDLENISWTELNEQPYV--N 354
Query: 322 VDTFQKQYEALKIPYPA 372
+D + Y+ +++P PA
Sbjct: 355 LDRLKTIYDVVEVPQPA 371
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -3
Query: 185 GTLSARAAQFTALCDILFAIFR---RFFD*SYECTIIPNVKNQ 66
G++ R FT +CDI+F F + FD SYE ++ ++N+
Sbjct: 311 GSIEQRFGNFTEMCDIMFTHFEAKAQMFD-SYEAKMLVFMRNE 352
>Z12017-9|CAA78053.1| 537|Caenorhabditis elegans Hypothetical
protein R08D7.7 protein.
Length = 537
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 625 WVDIVELLFRSVWPEGWL--LDGIQGPGQDGHHRSLPWSSG 509
W++ +++LF + GW L GI G Q H ++ W +G
Sbjct: 63 WIEAIDILFNDLRENGWTDKLRGISGCAQ--QHGTVYWKNG 101
>Z11505-11|CAA77591.1| 537|Caenorhabditis elegans Hypothetical
protein R08D7.7 protein.
Length = 537
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 625 WVDIVELLFRSVWPEGWL--LDGIQGPGQDGHHRSLPWSSG 509
W++ +++LF + GW L GI G Q H ++ W +G
Sbjct: 63 WIEAIDILFNDLRENGWTDKLRGISGCAQ--QHGTVYWKNG 101
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 190 EQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVD 327
E K+ A+ ++D + R ANP PPK+ A K+ P+P D
Sbjct: 170 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 213
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 190 EQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVD 327
E K+ A+ ++D + R ANP PPK+ A K+ P+P D
Sbjct: 367 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 410
>Z69360-6|CAA93282.1| 599|Caenorhabditis elegans Hypothetical
protein F25H8.6 protein.
Length = 599
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/85 (20%), Positives = 39/85 (45%)
Frame = +1
Query: 298 QAVPIPGMVDTFQKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKE 477
Q + PG+ F+ +P Q +V NQ+K I+A + S++ + +
Sbjct: 375 QIIDRPGIRSLFKFVLPEYHMPSGDVFQATIVPQLLNQMKQQIEALVHNSSSLSSIPDQV 434
Query: 478 INATKALLPYDQMTMEDFYDAHPDL 552
+ ++ A Y+ +++ + A P++
Sbjct: 435 MTSSSATSSYEDVSVNESQMAGPNV 459
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,535,165
Number of Sequences: 27780
Number of extensions: 414141
Number of successful extensions: 1191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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