Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B12
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 186 GNSLSESSPVYGTL*YSFRHFSAFFRLKLRMHNN 85
           G+  SE +P  G      +H   +FR  LR+H+N
Sbjct: 3   GSRSSEINPKEGLYDEGGKHTVHWFRKGLRLHDN 36


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +1

Query: 367 PADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHP 546
           PA+    +      +  + +D F++E  A++A   +  + T ++ P  +    +   A+P
Sbjct: 54  PAEEGEGMAGVTGEEPFDTLDTFLRELQADLAEASQPTSTTTSVTPSCRRQRYNIAAANP 113

Query: 547 DLA 555
            LA
Sbjct: 114 LLA 116


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 193 QKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPG 318
           Q  H AA++  + N + RVL+   +   +    YK  V + G
Sbjct: 99  QDVHSAAYRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIG 140


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 193 QKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPG 318
           Q  H AA++  + N + RVL+   +   +    YK  V + G
Sbjct: 99  QDVHSAAYRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIG 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,586
Number of Sequences: 438
Number of extensions: 4848
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)