Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B11
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   217   1e-57
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   210   3e-55
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   1.5  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.7  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   3.6  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    26   8.2  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  217 bits (531), Expect = 1e-57
 Identities = 100/140 (71%), Positives = 119/140 (85%)
 Frame = +3

Query: 72  CYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQEAF 251
           C D+L +L+KHLIP A++ ESKVFY KMKGDYYRYLAE A GE R    + S + Y+ A 
Sbjct: 99  CQDILTVLEKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAAS 158

Query: 252 DIAKAKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQAFDDAIAELDTLNEDSYKD 431
           +IA A++ PTHPIRLGLALNFSVFYYEI+NSP RAC+LAKQAFD+AI+ELD+L+E+SYKD
Sbjct: 159 EIATAELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKD 218

Query: 432 STLIMQLLRDNLTLWTSDTQ 491
           STLIMQLLRDNLTLWTSD +
Sbjct: 219 STLIMQLLRDNLTLWTSDAE 238


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  210 bits (512), Expect = 3e-55
 Identities = 97/140 (69%), Positives = 115/140 (82%)
 Frame = +3

Query: 72  CYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQEAF 251
           C+DVL +L+KHLIP A+  ESKVFY KMKGDYYRYLAE   GE      + S +AY+ A 
Sbjct: 98  CHDVLSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAAS 157

Query: 252 DIAKAKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQAFDDAIAELDTLNEDSYKD 431
           DIA A++ PT P+RLGLALNFSVFYYEI++SP  ACHLAKQ FD+AI+ELD+L+E+SYKD
Sbjct: 158 DIAVAELPPTDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKD 217

Query: 432 STLIMQLLRDNLTLWTSDTQ 491
           STLIMQLLRDNLTLWTSD +
Sbjct: 218 STLIMQLLRDNLTLWTSDAE 237


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 171  RYLAEVATG-ETRHSVVEDSQKAYQEAFDIAKAKMQPTHP-IRLGLALNFS 317
            RY+  ++   E R    ED+++A + ++  A A +QP H  I L LA+N S
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 644 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 516
           L + SV+I   +TFS V+R L  +T   + VCW  C   L+ A+
Sbjct: 43  LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 345 PARACHLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 464
           PA  C++  Q  D  I   D  N+D ++ S L  +LL+ +
Sbjct: 208 PAVLCYVNSQLVDKIIGFADLGNKDDFETSLLEFRLLKSS 247


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 90   LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 227
            +++K  IP++   E+K  Y +  GD+     +L E A  E  H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 720 R*HNIXFRRNGKVRCERLLTFLQATARVGFG 628
           R   I F R G  RCERLL +L A+  V +G
Sbjct: 97  RIEEIPFSRIGG-RCERLLPYLVASNPVNYG 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,436
Number of Sequences: 5004
Number of extensions: 60738
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)