Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B09
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 55 1e-08
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 45 2e-05
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 1e-04
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 40 3e-04
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 38 0.001
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 36 0.006
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 34 0.023
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 34 0.023
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 33 0.070
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.12
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.49
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 30 0.49
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 30 0.49
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 30 0.49
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 29 0.65
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 0.86
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 1.5
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 2.0
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 27 3.5
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 27 3.5
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 27 3.5
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 4.6
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 6.1
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 6.1
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 8.0
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 26 8.0
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 26 8.0
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 8.0
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 26 8.0
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 8.0
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 55.2 bits (127), Expect = 1e-08
Identities = 36/117 (30%), Positives = 54/117 (46%)
Frame = +2
Query: 176 LKTLNSHITCKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTCNIVIHQSHPLQY 355
LK L+S + C IC YF A +T C HTFC C+ +L E+ CP C +S +
Sbjct: 20 LKGLDSSLRCLICHEYF-RAPLITSCSHTFCSFCIRDYLREHPMCPACRAPEQESRLRKN 78
Query: 356 ISFDRTMQDIVYKLVPDLQDNELKRERDFYRARGLPCPKDTALAADKPTGDEPEQPD 526
+ ++ +K++ LK E L P +T +A D +GDE + D
Sbjct: 79 TILEEILES--FKVIRPTLFEFLKVEN--VPKPVLQAP-ETVIAQDSASGDEEWEDD 130
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 44.8 bits (101), Expect = 2e-05
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 179 KTLNSHITCKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTC 319
+ ++ + C+IC G D V+ C HTFC CL++ L ++ CPTC
Sbjct: 161 ENVSRELECQICFGMLYDPV-VSPCGHTFCGPCLMQALTQSPQCPTC 206
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 197 ITCKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTCNIVIHQSHPLQYISFD 367
+ C IC + T C HT+C CL+ L+E+ +CPTC ++ Y+ ++
Sbjct: 83 LECPICTEA-LQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPSPAYLVYE 138
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 191 SHITCKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTCNIVIHQSH 343
SH C ICR I +T C H +C CL L+ +++CP C +++++
Sbjct: 1088 SHQICIICRD-IIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNN 1137
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +2
Query: 194 HITCKICRGYFIDATTVTECLHTFCKSCLVKHLE-----ENNTCPTCNI 325
+I CKIC DA + C HTFC+ C+ +++ EN CP+C I
Sbjct: 708 NIVCKICDEVAQDAIE-SRCHHTFCRLCVTEYINAAGDGENVNCPSCFI 755
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 36.3 bits (80), Expect = 0.006
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 203 CKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTC 319
C +C FI TEC H FC SC+ + + CP C
Sbjct: 256 CSLCME-FIHCPAATECGHIFCWSCINGWTSKKSECPLC 293
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 34.3 bits (75), Expect = 0.023
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 173 KLKTLNSHITCKICRGYFIDATTVTECLHTFCKSCLVKHLE-ENNTCPTC 319
+LKT + C +C ++ C H FC C+ K +E CP C
Sbjct: 617 ELKTFRAMCKCSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPIC 666
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 34.3 bits (75), Expect = 0.023
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 197 ITCKICRGYFID----ATTVTECLHTFCKSCLVKHLEENNTCPTC 319
+TC IC + T C H F K+CL K LE + TCP C
Sbjct: 105 LTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLC 149
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 32.7 bits (71), Expect = 0.070
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 197 ITCKICRGYFIDATTVTECLHTFCKSCLVKHLE-ENNTCPTC 319
+ C +C + + C H FC +C+ E + +TCP C
Sbjct: 637 LKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQC 678
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 31.9 bits (69), Expect = 0.12
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 245 TECLHTFCKSCLVKHLE--ENNTCPTCNIVIHQSHPLQ 352
T+C HT+C +C++ L+ N +CP C I + P Q
Sbjct: 211 TDCGHTYCYACIMSRLKLVNNVSCPICKHRIRFALPDQ 248
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 29.9 bits (64), Expect = 0.49
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 242 VTECLHTFCKSCLVKHLEENNTCPTC 319
+T C H + + CL++ +E + CP C
Sbjct: 644 LTPCHHLYHRQCLLQWMETRSICPVC 669
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 29.9 bits (64), Expect = 0.49
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 173 KLKTLNSHITCKICRGYFIDATTVTECLHTFCKSCL-VKHLEENNTCPTCN 322
K++ N + C +C+ +A C FC+ C+ L+ + CP C+
Sbjct: 272 KMQPPNISLACTLCKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCH 322
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 750 FRVWSLPSNSSLHNMSISLYWSIPFSTFLATNFLRCVIVA*AEHLMKLLLSVR 592
F + S H + I LYW+ P + + N +R +++ HL L+S++
Sbjct: 1087 FSIKDFMSLEHTHTLLICLYWAAPENCRPSLNRIRDIVIVDNSHLKARLISLK 1139
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.49
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 203 CKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTC 319
C IC+ + + T C H FC+ C + + TC C
Sbjct: 254 CLICKKDY-RSPIATTCGHHFCEQCAITRYRKTPTCIQC 291
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 29.5 bits (63), Expect = 0.65
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +2
Query: 236 TTVTECLHTFCKSCLVKHLEENNTCPTCNIVIHQSHPLQYISFDRTMQDIVYKLVPDLQD 415
TT+ L F K+ ++ ++ T P IV S+P +Y ++ MQ+++ K + + D
Sbjct: 148 TTIGNNLRIFWKNGKIRCIKLTCT-PDAEIVNFTSNPNRYRFYETNMQELIRKTICEKSD 206
Query: 416 NELKR 430
+++
Sbjct: 207 KAIEK 211
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 29.1 bits (62), Expect = 0.86
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 176 LKTLNSHIT-CKICRGYFIDATTVTECLHTFCKSCLVKHLE 295
LK+ + IT C IC I + C H C CL +H++
Sbjct: 867 LKSFEALITECPICCNEPIQNPLLLNCKHACCGDCLSEHIQ 907
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Frame = +2
Query: 203 CKICRGYFIDA---TTVTECLHTFCKSCLVKHLEENNTCPTC 319
C IC Y ++ C H + C +++ N CPTC
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTC 312
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = +2
Query: 203 CKICRGYFI--DATTVTECLHTFCKSCLVKHLEENNTCPTC 319
C IC F D C H F ++C+ L N TC C
Sbjct: 396 CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAIC 436
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 399 TSL*TISCMVLSKLIYCSGCDWWITMLHV---GHVLFSSKCFTRQLLQNV*RHSV 244
T+L ++C + +K I C CD T ++ G VL ++ +T+++ +N H +
Sbjct: 34 TALDRLNCNIEAKDISCQPCDAQSTGGYIPGKGIVLCENRLYTKKMAENTIAHEM 88
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 251 CLHTFCKSCLVKHLEENNTCPTC--NIVIHQSHP 346
C H CL LE TCP C +++ +QS P
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRRSVIGNQSSP 361
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = +2
Query: 245 TECLHTFCKSCLVKHLEENNTCPTCNIVIHQSHPLQYISFD 367
T C H FC C++ L C + + HP + I +
Sbjct: 219 TPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVICLE 259
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 774 LQRVTYTNFRVWSLPSNSSLHNMSISLYW 688
L R TY++ R+ S PS+S H S S W
Sbjct: 944 LLRYTYSDERIESYPSDSRFHFNSSSKSW 972
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +2
Query: 251 CLHTFCKSCLVKHLEENNT--CPTC 319
C H F SCL K + +N+ CP C
Sbjct: 1579 CRHKFHASCLYKWFKSSNSSRCPLC 1603
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 520 LLRLISCRLVCSEGSVLRTRQSTGTIEVTLTFQL 419
++ L++C L+ EG V+RT G ++ +QL
Sbjct: 448 MIDLLTCTLIEVEGEVMRTSIKKGEPKILYPYQL 481
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = +2
Query: 173 KLKTLNSHITCKICRGYFIDATTVTECLHTFCKSCL 280
+LK + + + C +C + + C H C+ CL
Sbjct: 737 RLKLIET-LQCSLCMDVVAELLIIVPCGHFLCRECL 771
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -2
Query: 859 KQFHERGVTEDNLKSILGLYWRRRGDPEPPTSHIY 755
++ H G E + K + G W++ + TSH++
Sbjct: 60 RKLHAEGSKERSFKMVQGRIWKKGYESNELTSHLF 94
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 239 TVTECLHTFCKSCLVKHLEENNTCPTCN 322
T +C + FC CL E N TCN
Sbjct: 308 TCKKCKYEFCWVCLGPWTEHGNNWYTCN 335
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +2
Query: 251 CLHTFCKSCLVKHLEENNTCPTCNIVIHQSHPLQYI 358
C H F CL NTCP C + L+++
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLCRTEFLKVDVLEFV 91
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 203 CKICRGYF--IDATTVTECLHTFCKSCL 280
C +C F D +T C H C+SCL
Sbjct: 174 CNVCFDEFNGTDCFQLTRCGHVSCQSCL 201
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 203 CKICRGYFIDATTVTECLHTFCKSCLVKHLE 295
C C A ++ C H +C SCL++ +E
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLLRFVE 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,571,913
Number of Sequences: 5004
Number of extensions: 74505
Number of successful extensions: 252
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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