Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B08
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   216   3e-57
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    26   6.6  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   8.7  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  216 bits (528), Expect = 3e-57
 Identities = 100/141 (70%), Positives = 118/141 (83%), Gaps = 1/141 (0%)
 Frame = +1

Query: 217 FTVADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 396
           + VAD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 397 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 573
           L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKP
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 574 LNMILDDGGDLTNLVHTKYPE 636
           LNMILDDGGDLT LVH ++PE
Sbjct: 126 LNMILDDGGDLTALVHERHPE 146



 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +2

Query: 632 PNLLKDVKGITEETTTGVHNLYKMFREGLL 721
           P LL D++GI+EETTTGVHNLYKMF+E  L
Sbjct: 145 PELLVDIRGISEETTTGVHNLYKMFKENKL 174


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 709 SEHFIQIMYPGCSFFSDTFYVF*KIRGT 626
           ++ +I+I+  G   ++D FYVF ++ GT
Sbjct: 165 AQSWIKIVSGGVESYNDAFYVFEELNGT 192


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 258 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 437
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 438 H 440
           H
Sbjct: 150 H 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,993
Number of Sequences: 5004
Number of extensions: 65827
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)