Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B08
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S57284-1|AAB25906.1|  437|Caenorhabditis elegans S-adenosylhomoc...   235   4e-62
M64306-1|AAA28062.1|  437|Caenorhabditis elegans S-adenosylhomoc...   235   4e-62
AF043699-5|AAB97565.1|  437|Caenorhabditis elegans Hypothetical ...   235   4e-62
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...    28   8.2  

>S57284-1|AAB25906.1|  437|Caenorhabditis elegans
           S-adenosylhomocysteine hydrolase protein.
          Length = 437

 Score =  235 bits (574), Expect = 4e-62
 Identities = 106/140 (75%), Positives = 122/140 (87%)
 Frame = +1

Query: 217 FTVADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 396
           + VAD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVLIET
Sbjct: 8   YKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVLIET 67

Query: 397 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPL 576
           L  LGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+EY WCIEQT++F DG+PL
Sbjct: 68  LTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDGQPL 127

Query: 577 NMILDDGGDLTNLVHTKYPE 636
           NMILDDGGDLTNLVH KYP+
Sbjct: 128 NMILDDGGDLTNLVHAKYPQ 147



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +2

Query: 632 PNLLKDVKGITEETTTGVHNLYKMFREG 715
           P  L  ++G++EETTTGVHNL KM  +G
Sbjct: 146 PQYLAGIRGLSEETTTGVHNLAKMLAKG 173


>M64306-1|AAA28062.1|  437|Caenorhabditis elegans
           S-adenosylhomocysteine hydrolase protein.
          Length = 437

 Score =  235 bits (574), Expect = 4e-62
 Identities = 106/140 (75%), Positives = 122/140 (87%)
 Frame = +1

Query: 217 FTVADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 396
           + VAD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVLIET
Sbjct: 8   YKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVLIET 67

Query: 397 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPL 576
           L  LGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+EY WCIEQT++F DG+PL
Sbjct: 68  LTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDGQPL 127

Query: 577 NMILDDGGDLTNLVHTKYPE 636
           NMILDDGGDLTNLVH KYP+
Sbjct: 128 NMILDDGGDLTNLVHAKYPQ 147



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +2

Query: 632 PNLLKDVKGITEETTTGVHNLYKMFREG 715
           P  L  ++G++EETTTGVHNL KM  +G
Sbjct: 146 PQYLAGIRGLSEETTTGVHNLAKMLAKG 173


>AF043699-5|AAB97565.1|  437|Caenorhabditis elegans Hypothetical
           protein K02F2.2 protein.
          Length = 437

 Score =  235 bits (574), Expect = 4e-62
 Identities = 106/140 (75%), Positives = 122/140 (87%)
 Frame = +1

Query: 217 FTVADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 396
           + VAD KLA++GRKEI+LAE EMPGLMA R KY P++ LKGARIAG LHMT+QTAVLIET
Sbjct: 8   YKVADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVLIET 67

Query: 397 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPL 576
           L  LGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+EY WCIEQT++F DG+PL
Sbjct: 68  LTALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDGQPL 127

Query: 577 NMILDDGGDLTNLVHTKYPE 636
           NMILDDGGDLTNLVH KYP+
Sbjct: 128 NMILDDGGDLTNLVHAKYPQ 147



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +2

Query: 632 PNLLKDVKGITEETTTGVHNLYKMFREG 715
           P  L  ++G++EETTTGVHNL KM  +G
Sbjct: 146 PQYLAGIRGLSEETTTGVHNLAKMLAKG 173


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 471 CSCGLVLCTI-NVTAGPLYLCSQFY*SLNKNRCLYCHV*AAGYSGTFEYFSWSI 313
           C CG+++  I N+TA         Y  +N    L   + + G+   F YF WS+
Sbjct: 442 CECGILIAVIENITALITQFFLMCYLGVNAACALQSLLKSPGWRPGFRYFHWSL 495


>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 104 LCLKYAAFCARERVLQYQVPIYFRYFNKNNLKRKQ 208
           +CL  AA C R+ ++ + +P +F++F   + K K+
Sbjct: 357 VCLMLAAQCVRDDIVNHVIP-FFKHFQNPDWKYKE 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,227,454
Number of Sequences: 27780
Number of extensions: 364036
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)