Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B07
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    29   0.84 
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    29   1.1  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    28   1.9  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   2.6  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   3.4  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    26   5.9  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   5.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.9  

>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
 Frame = +2

Query: 386 NVEFLNDIRA-SAASVHYEKDEAVKAKK--RAELEETKYPFFFEKL------NEILTKNN 538
           N E L DI + +  ++ +  DE  +AK   R    E  +P  F  L       +I+TKN 
Sbjct: 249 NSESLPDILSITLDNLSHPTDEYFEAKAYFRPSAIERNWPKIFVTLLSAWLSTQIITKNR 308

Query: 539 GHIALGKLTWGDFVYAGMYDYLKAMLQKPDL 631
             I L    W D++Y+   D+    +QKP L
Sbjct: 309 TSIRL----WIDYLYSTAVDFYTNWIQKPIL 335


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 382 VDLEGLLVIGPGESVLAAEVPADGSA 305
           VD++GL    PG+ +     PADGSA
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 323 YLGRKYGLAGANDEEAFE--IDQNVEFLNDIRASAASVHYEKDEAVKA-KKRAELEETKY 493
           YL   +G+  AN     +  +D ++ F +       SVH   DEA++  KK   ++ +  
Sbjct: 25  YLTDNFGMGNANRVNLNQQVLDGSISFRDAFAKMLDSVHLSYDEALEVLKKNVAIDPSFK 84

Query: 494 PFF 502
           PF+
Sbjct: 85  PFY 87


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 553 KRDMTVVLRQYLIEFLEKERVFSLLQFRPLLSFDGLVFLVVDRCGT 416
           +R + + LRQY I   E  +++  L F     F   + + +  C T
Sbjct: 416 ERALPIELRQYFIALTENAQIYEELDFEKQRLFSACIEVYLSYCNT 461


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 338 YGLAGANDEEAFEIDQNVEFLNDIRASAASVHYEKDEAVKAKKRAELEETKYPFFFEK-- 511
           Y     N+ +A+E  Q  + ++D+ A AA+V      A    +   + +T Y   F+K  
Sbjct: 110 YQAKATNNMQAYEQRQK-QLMDDVEAKAAAVKRSPAAAFDEMRNKLVGKTNYKSIFDKST 168

Query: 512 LNEILTKN 535
            N  +T N
Sbjct: 169 SNSTVTSN 176


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 353 ANDEEAFEIDQNVEFLNDIRASAASVHYEKDEAVKAKKRAELEETKYPFFFE 508
           AND+E   I + +E   ++ A AA    +KD       +   E+ K  F+ E
Sbjct: 333 ANDDERMVISETLEEEENLLALAAKRSKKKDVITVDHSKINYEDFKKDFYVE 384


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 575 FVYAGMYDYLKAMLQKPDLEQ 637
           FV  G+YDY+ +M  K DL+Q
Sbjct: 212 FVARGLYDYIFSMAVKLDLKQ 232


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 67  CDVLLNNYSLLHNNPTMPNVKFYYFPVKALGESQRLLLAYGGQEFED 207
           CD +L N+S     P  P V F   P++ + +       Y  +E  D
Sbjct: 354 CDEILKNWSPGLEKPAKPEVNFNNLPLEIVNDDDSEDDIYAAEELLD 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,688
Number of Sequences: 5004
Number of extensions: 51068
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)