Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B07
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 31 0.88
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 31 0.88
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 31 1.5
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 31 1.5
04_04_1367 - 32974757-32975499,32975957-32976179 30 2.0
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 3.6
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 3.6
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 29 4.7
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 29 4.7
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 29 6.2
01_06_0960 - 33376012-33376433,33376566-33376731,33376848-333770... 29 6.2
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205 29 6.2
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609... 29 6.2
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 31.5 bits (68), Expect = 0.88
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 257 FGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGAN 358
FGQ+PVL+ + +S AI RY+ KY GA+
Sbjct: 56 FGQIPVLQDGDEVLYESRAINRYIATKYKAEGAD 89
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 31.5 bits (68), Expect = 0.88
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 257 FGQMPVLEIDGKQYAQSTAICRYLGRKY 340
FG++PVLE QS AI RY+ RKY
Sbjct: 52 FGEIPVLEDGDLTLYQSRAIARYIFRKY 79
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 508 ETQ*DTDEEQRSYRAWQVDLGRLCVRRHV 594
E + D D+E SY +W VD R+HV
Sbjct: 1572 EAEIDEDQEPLSYESWDVDFATTAYRQHV 1600
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 30.7 bits (66), Expect = 1.5
Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 18/173 (10%)
Frame = +2
Query: 230 GQNSNLRLRFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAG-AN---------------- 358
G + R FGQ+P + +S AICRY+ RK+ AN
Sbjct: 43 GPDHLARNPFGQVPAFQDGDLMLFESRAICRYILRKHRATDEANLLREGDPSESAVVDAW 102
Query: 359 -DEEAFEIDQNVEFLNDIRASAASVHYEKDEAVKAKKRAELEETKYPFFFEKLNEILTKN 535
D EA + +V + R ++ E DE V A+ A L ET + L
Sbjct: 103 LDVEALRYEPSVHAVFVQRRVVPALGGEPDERVIAESVARLRETLAVY-----EARLEAT 157
Query: 536 NGHIALGKLTWGDFVYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAIPKVK 694
G++A G+++ D + Y M + + YP E +L P V+
Sbjct: 158 RGYLAGGEVSLADLSHFPYTRYFMEMPYEVPVFGAYPRVTAWWERLLTRPSVR 210
>04_04_1367 - 32974757-32975499,32975957-32976179
Length = 321
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 781 FTLLTKEPI*CLNGNRFLKFCAR 713
FT+L+K+ + NGN +LK CAR
Sbjct: 281 FTMLSKDVVFDFNGNYYLKLCAR 303
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 344 LAGANDEEAFEIDQNVEFLNDIRASAASVHYEKDEAVKAKKRAELEET 487
L G N+ E+D V ++++ +S H EK+EA A+K A E T
Sbjct: 1289 LVGINEALKGELDTKVAMFDELQEQFSSTHAEKEEA--AEKLAVHERT 1334
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 392 EFLNDIRASAASVHYEKDEAVKAKKRAELEETKYP 496
E L D+R AS+HY +D+ A K + KYP
Sbjct: 714 EILEDVRVECASLHYGQDDRFGAVK--SINVVKYP 746
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 29.1 bits (62), Expect = 4.7
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 14/149 (9%)
Frame = +2
Query: 176 CWLTAARSSKTIAFHLKTGQNSN----LRLRFGQMPVLEIDGKQYAQSTAICRYLGRKYG 343
C A S + +A + G+N + R FG++P E +S AI RY+ R Y
Sbjct: 20 CLEEAGASYELVAVDMAAGENRSRHHLARSPFGKIPAFEDGEVTLFESRAIQRYVLRNYN 79
Query: 344 ----LAGANDEEAFEIDQNVEFLNDIRASAASVHYEKDEAVK------AKKRAELEETKY 493
L N EE+ +D +E + A H ++ +K A+ +A ++E
Sbjct: 80 KPDLLREGNLEESAMVDMWME-VEAHHYDPAIFHIIRECVIKPMIGGGARDQAIVDEN-- 136
Query: 494 PFFFEKLNEILTKNNGHIALGKLTWGDFV 580
EKL ++L ++ + GDFV
Sbjct: 137 ---VEKLRKVLEVYERRLSESEYLAGDFV 162
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 29.1 bits (62), Expect = 4.7
Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 12/158 (7%)
Frame = +2
Query: 257 FGQMPVLEIDGKQYA-QSTAICRYLGRKYG------LAGANDEEAFEIDQNVEFLNDIRA 415
FGQ+P + DG Y +S AI +Y+ RKY L N EA +D E
Sbjct: 52 FGQIPAFQ-DGDLYLFESRAIGKYILRKYKTREADLLREGNLREAAMVDVWTEVETHQYN 110
Query: 416 SAASVHYEKDEAVKAKKRAELEETKYPFFFEKLNEILTKNNGHIALGKLTWGDFV-YAGM 592
SA S + A + + EKL ++L ++ GDFV +A +
Sbjct: 111 SAISPIVYECIINPAMRGIPTNQKVVDESAEKLKKVLEVYEARLSQSTYLAGDFVSFADL 170
Query: 593 --YDYLKAMLQKP--DLEQKYPAFRKPIEAVLAIPKVK 694
+ Y + P L YP + E ++A P VK
Sbjct: 171 NHFPYTFYFMGTPYASLFDSYPHVKAWWERLMARPSVK 208
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 455 KAKKRAELEETKYPFFFEKLNEILTKNNG 541
+A+K+AE ++ EK NEI+TK+NG
Sbjct: 278 RAQKKAERKQYLQRLHEEKRNEIITKSNG 306
>01_06_0960 -
33376012-33376433,33376566-33376731,33376848-33377033,
33377206-33377442
Length = 336
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 536 NGHIALGKLTWGDFVYAGMYDYLKAMLQKPDLEQKY-PAFRKPIEAVLAIPKVKAYVDAA 712
+G +G+ G F +Y+Y Q P L Y P RK V P K YVD
Sbjct: 196 SGSHTIGRAQCGSFARDRLYNYSGEGRQDPSLNTAYAPELRK--ACVAGDPFDKTYVDMD 253
Query: 713 PST 721
P +
Sbjct: 254 PGS 256
>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
Length = 220
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 257 FGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGAN 358
FGQMP + +S A+ RY+ RKY + AN
Sbjct: 52 FGQMPAFQDGDLLLFESRAVGRYILRKYKTSEAN 85
>01_03_0050 +
11959421-11959736,11959892-11959960,11960641-11960979,
11961090-11961152,11962472-11962962,11963773-11964441
Length = 648
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 374 EIDQNVEFLNDIRA-SAASVHYEKDEAVKAKKRAELEETKYPFFFEKLNEILT 529
E+ Q V N R+ SA S ++ ++ +KR LEET + K +EIL+
Sbjct: 186 ELQQAVNMTNGSRSESAQSSKSRENSCMERRKRRRLEETVNTSLYIKKHEILS 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,437,489
Number of Sequences: 37544
Number of extensions: 340901
Number of successful extensions: 1259
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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