Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B06
         (1077 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   7.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 346 KXVRTPXFIXNPCWXLPPATTSXXSPVH 263
           K  RT  ++ +P   +PP T S   P H
Sbjct: 99  KRQRTDDWLSSPSGNVPPLTPSPGPPSH 126


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -3

Query: 316 NPCWXLPPATTSXXSPVHSXAXADRASSMXXPXAGFSXXG 197
           +P    PPATTS  SP    + A     +    A +   G
Sbjct: 29  SPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYDCEG 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,917
Number of Sequences: 336
Number of extensions: 1780
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30929100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)