Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B06
         (1077 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    29   0.85 
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    29   0.85 

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 288 VAGGNXQQGFXMXQGVLTXFSXSHFXCHXGHSC 386
           + GGN +QGF M QGVL            GH C
Sbjct: 52  ITGGNDKQGFPMFQGVLLPHRV-RLLLRAGHPC 83



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 391 KPRRDXEXXRTSXRGCI 441
           +PRRD E  R S RGCI
Sbjct: 85  RPRRDGERKRKSVRGCI 101


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 288 VAGGNXQQGFXMXQGVLTXFSXSHFXCHXGHSC 386
           + GGN +QGF M QGVL            GH C
Sbjct: 52  ITGGNDKQGFPMFQGVLLPHRV-RLLLRAGHPC 83



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 391 KPRRDXEXXRTSXRGCI 441
           +PRRD E  R S RGCI
Sbjct: 85  RPRRDGERKRKSVRGCI 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,451
Number of Sequences: 5004
Number of extensions: 22944
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)