Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B06
(1077 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical ... 33 0.35
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 30 2.5
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 30 2.5
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 30 2.5
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 30 2.5
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 30 2.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.3
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.7
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 5.7
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 5.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 5.7
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 5.7
>AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical
protein Y71A12B.1 protein.
Length = 246
Score = 33.1 bits (72), Expect = 0.35
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 240 ARSAXAXEWTGLXXDVVAGGNXQQGFXMXQGVLT 341
A A EW G + GGN +QGF M QG+LT
Sbjct: 37 AIDALGDEWKGYVVRI-GGGNDKQGFPMKQGILT 69
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = +1
Query: 799 GFPXXXRXRXAXEKXGPXPSPXWXXXXSCXGXPPLQXNSAPPGCP 933
GFP + GP +P W G P + PPG P
Sbjct: 99 GFPGNDGGNGRPGEPGPPGAPGWDGCNGTDGAPGIPGRPGPPGMP 143
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = +1
Query: 799 GFPXXXRXRXAXEKXGPXPSPXWXXXXSCXGXPPLQXNSAPPGCP 933
GFP + GP +P W G P + PPG P
Sbjct: 99 GFPGNDGGNGRPGEPGPPGAPGWDGCNGTDGAPGIPGRPGPPGMP 143
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = +1
Query: 799 GFPXXXRXRXAXEKXGPXPSPXWXXXXSCXGXPPLQXNSAPPGCP 933
GFP + GP +P W G P + PPG P
Sbjct: 99 GFPGNDGGNGRPGEPGPPGAPGWDGCNGTDGAPGIPGRPGPPGMP 143
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = +1
Query: 799 GFPXXXRXRXAXEKXGPXPSPXWXXXXSCXGXPPLQXNSAPPGCP 933
GFP + GP +P W G P + PPG P
Sbjct: 99 GFPGNDGGNGRPGEPGPPGAPGWDGCNGTDGAPGIPGRPGPPGMP 143
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = +1
Query: 799 GFPXXXRXRXAXEKXGPXPSPXWXXXXSCXGXPPLQXNSAPPGCP 933
GFP + GP +P W G P + PPG P
Sbjct: 99 GFPGNDGGNGRPGEPGPPGAPGWDGCNGTDGAPGIPGRPGPPGMP 143
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 4.3
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +3
Query: 918 PPXVSXXPGXDXXPXRPSXLXXPXXTXXPPXXXXPXQRPPTPXVPXPXTXPSG 1076
PP + G P P L P T PP P PP P P P G
Sbjct: 716 PPGLPPITGGPPPPPPPGGL--PPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 4.3
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +3
Query: 918 PPXVSXXPGXDXXPXRPSXLXXPXXTXXPPXXXXPXQRPPTPXVPXPXTXPSG 1076
PP + G P P L P T PP P PP P P P G
Sbjct: 716 PPGLPPITGGPPPPPPPGGL--PPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 4.3
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +3
Query: 918 PPXVSXXPGXDXXPXRPSXLXXPXXTXXPPXXXXPXQRPPTPXVPXPXTXPSG 1076
PP + G P P L P T PP P PP P P P G
Sbjct: 299 PPGLPPITGGPPPPPPPGGL--PPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical protein
F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 5.7
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +3
Query: 918 PPXVSXXPGXDXXPXRPSXLXXPXXTXXPPXXXXPXQRPPTPXVPXPXTXP 1070
PP + PG P RP P PP PP P P P P
Sbjct: 106 PPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPP-PCKPCPQGPP 155
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.1 bits (62), Expect = 5.7
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +3
Query: 918 PPXVSXXPGXDXXPXRPSXLXXPXXTXXPPXXXXPXQRPPTPXVPXPXTXP 1070
PP + PG P RP P PP PP P P P P
Sbjct: 101 PPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPP-PCKPCPQGPP 150
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein 43
protein.
Length = 303
Score = 29.1 bits (62), Expect = 5.7
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +3
Query: 918 PPXVSXXPGXDXXPXRPSXLXXPXXTXXPPXXXXPXQRPPTPXVPXPXTXP 1070
PP + PG P RP P PP PP P P P P
Sbjct: 108 PPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPP-PCKPCPQGPP 157
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 1 (col-1) gene, complete cds. ).
Length = 296
Score = 29.1 bits (62), Expect = 5.7
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +3
Query: 918 PPXVSXXPGXDXXPXRPSXLXXPXXTXXPPXXXXPXQRPPTPXVPXPXTXP 1070
PP + PG P RP P PP PP P P P P
Sbjct: 101 PPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAPCEPTTPP-PCKPCPQGPP 150
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen protein.
Length = 303
Score = 29.1 bits (62), Expect = 5.7
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +3
Query: 918 PPXVSXXPGXDXXPXRPSXLXXPXXTXXPPXXXXPXQRPPTPXVPXPXTXP 1070
PP + PG P RP P PP PP P P P P
Sbjct: 108 PPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPP-PCKPCPQGPP 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,018,042
Number of Sequences: 27780
Number of extensions: 199335
Number of successful extensions: 388
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2887577688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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