Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B05
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    29   0.68 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   2.1  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   3.6  

>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 477 QLGSEMMAAELKIYEALSKILESGIEVAKENIQKSKIDLAQAKTVRKNRIEYDVL 641
           Q+  +M A E+ +YE   K  ++  E  K  I + + DL  A+   + R +YD L
Sbjct: 55  QMQLDMNAKEVDVYEGELKKTQTFCEAEKTEISQLEQDLLVAQEELRKREQYDEL 109


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 169 LSLFFICKC*RCVFYLQKSRKIKNILTPNF 80
           LS+F I +  RC+  +  +RKI  +L  NF
Sbjct: 611 LSIFAIARIYRCILLIPYTRKIAKLLFSNF 640


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 576 SVCSLWPPLFRFLEFSRVLRRFLIQQPSF 490
           S+  +W  +F   E S+V+RRF    PSF
Sbjct: 252 SISGVWSRMFSETEASQVMRRFKEIDPSF 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,894
Number of Sequences: 5004
Number of extensions: 61169
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)