Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B05
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0304 - 22206490-22207065                                         29   3.8  
03_05_0201 + 21924279-21925205,21925700-21926320                       28   8.8  

>11_06_0304 - 22206490-22207065
          Length = 191

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +3

Query: 453 CEFAVTKSQLGSEMMAAELKIYEALSKILESGIEVAKENIQ 575
           C +AVTK  + S  + A+ KI + LSK  + GIE+  E+++
Sbjct: 46  CNYAVTK--VTSTPVLADRKISKNLSKHKDDGIEMTHEDVE 84


>03_05_0201 + 21924279-21925205,21925700-21926320
          Length = 515

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 288 DDVIRRRLLIDGDGTGDDRRLNVLLK 365
           DD+IR R     DG G+D  L VLL+
Sbjct: 263 DDIIRERAAGKDDGDGEDDLLGVLLR 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,101,132
Number of Sequences: 37544
Number of extensions: 335296
Number of successful extensions: 817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)