Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B05
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-5|CAB54184.1|  210|Caenorhabditis elegans Hypothetical pr...    56   3e-08
U13645-10|AAM15546.1|  418|Caenorhabditis elegans Hypothetical p...    29   3.4  
U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U13645-8|AAM15544.1|  565|Caenorhabditis elegans Hypothetical pr...    29   3.4  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    29   6.0  

>Z82256-5|CAB54184.1|  210|Caenorhabditis elegans Hypothetical
           protein B0513.2 protein.
          Length = 210

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 3/202 (1%)
 Frame = +3

Query: 282 MGDDVIRRRLLIDGDGTGDDRRLNVLLKTLIKWCNTTDDKPEESKATHDRMLAQLAQCEF 461
           M +D + R+L+ DG+G GDDR++   + T  +     D K    +A   ++   L   E 
Sbjct: 1   MKEDTLLRKLVADGEGVGDDRKVQ-QIATFFRESRKEDAKTSVPEAV--KVTKALEFLEL 57

Query: 462 AVTKSQLGSEMMAAELKIYEALSKILESGIEVAKENIQKSKIDLAQAKTVRKNRIEYDVL 641
           ++ K +  S M        +  ++ ++  IE   + ++ +K +LA AK V++NR EY  L
Sbjct: 58  SMLKQKRISHMNKIHATECDQFAEEIDQSIEEMYKKMEVAKNELADAKIVKRNRQEYRKL 117

Query: 642 X*GYQ*TA*S*GNL*EIEHSED*TSKLGNPKQQLESRLALRKKQFHVLVTSSHQLQAXLD 821
                        L E+    + T KLG  K  LE +   +K     L+   + LQA + 
Sbjct: 118 V----------NVLEEVPSRAETTRKLGEVKDDLERQHERQKVLEAKLMDRRNHLQAFMI 167

Query: 822 ELXDAETXC---DDFXMKEISN 878
            L + +  C   DD   + +SN
Sbjct: 168 ILSNFQRFCAEDDDDDAEVMSN 189


>U13645-10|AAM15546.1|  418|Caenorhabditis elegans Hypothetical
           protein C05D10.4c protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 468 TKSQLGSEMMAAELKIYEALSKILESGIEVAKENIQKS 581
           T +QLG        K+ + LSKI+E+G E A+E+I+ +
Sbjct: 261 TLAQLGVSNPEIRKKLLDDLSKIIENGPEPAQEDIRNN 298


>U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical
           protein C05D10.4b protein.
          Length = 597

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 468 TKSQLGSEMMAAELKIYEALSKILESGIEVAKENIQKS 581
           T +QLG        K+ + LSKI+E+G E A+E+I+ +
Sbjct: 440 TLAQLGVSNPEIRKKLLDDLSKIIENGPEPAQEDIRNN 477


>U13645-8|AAM15544.1|  565|Caenorhabditis elegans Hypothetical
           protein C05D10.4a protein.
          Length = 565

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 468 TKSQLGSEMMAAELKIYEALSKILESGIEVAKENIQKS 581
           T +QLG        K+ + LSKI+E+G E A+E+I+ +
Sbjct: 408 TLAQLGVSNPEIRKKLLDDLSKIIENGPEPAQEDIRNN 445


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
            translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +3

Query: 390  TDDKPEESKATHDRMLAQLAQCEFAVTKSQLGSEMMAAELKIYEALSKILES-GIEVAKE 566
            TD + E     H+    QLA    A+ K   G  + A+ L   EAL + L+S  I  +  
Sbjct: 804  TDREDEVDYLRHEAD-RQLANALHAIRKKPEGVYVQASTLGSLEALLEFLKSQNIPYSNV 862

Query: 567  NI-QKSKIDLAQAKTVRKNRIEY 632
            NI    K D+ +A  +++++ EY
Sbjct: 863  NIGPVHKKDVQKASAMKEHKAEY 885


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,162,520
Number of Sequences: 27780
Number of extensions: 346399
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)