Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B05
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   2.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   8.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 530 ENSRKRNRGGQREHTEEQNRFSTSKDCQKKQN 625
           +N  K+N   Q ++ +  NR + +K    KQN
Sbjct: 475 QNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQN 506



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +2

Query: 512 NLRSTLENSRKRNRGGQREHTEEQNRFSTSKDCQKKQN 625
           N  +  +N+ K+N   Q ++ +  N+ + ++    KQN
Sbjct: 444 NQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQN 481



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 530 ENSRKRNRGGQREHTEEQNRFSTSKDCQKKQN 625
           +N  K+N   Q ++ +  NR + +K    +QN
Sbjct: 465 QNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQN 496


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 536 SRKRNRGGQREHTEEQNRFSTSKDCQKKQNRI 631
           SR R +GG +++         SK+C  ++  I
Sbjct: 182 SRSRKKGGLKDNLIPDKNDPDSKECSNQEYEI 213


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 359 KYIQSPVVPSTVTVDQKSSTNHIVT 285
           ++I++  VP T  V++K S  HI T
Sbjct: 88  EFIKNIWVPDTFFVNEKQSYFHIAT 112


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 359 KYIQSPVVPSTVTVDQKSSTNHIVT 285
           ++I++  VP T  V++K S  HI T
Sbjct: 88  EFIKNIWVPDTFFVNEKQSYFHIAT 112


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 150 HIKNKDKFE 176
           H KNKDKFE
Sbjct: 525 HAKNKDKFE 533


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 359 KYIQSPVVPSTVTVDQKSSTNHIVT 285
           ++I++  VP T  V++K S  HI T
Sbjct: 27  EFIKNIWVPDTFFVNEKQSYFHIAT 51


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 606 SLLVLNLFCSSVCSLWPPLFRF 541
           ++ V N+  +S CSL+  +F F
Sbjct: 276 NVFVNNILAASACSLFVVIFHF 297


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 194  NLIISEFKFILVLYM*VLTLCVL 126
            NL++     ILV+ + V+ +CVL
Sbjct: 1586 NLVVPVVAAILVIIVAVIVICVL 1608


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,137
Number of Sequences: 438
Number of extensions: 4475
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)