Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B04
(972 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.015
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 35 0.020
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.32
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.57
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.57
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.57
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 30 0.57
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.75
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.0
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 3.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.015
Identities = 32/131 (24%), Positives = 37/131 (28%), Gaps = 6/131 (4%)
Frame = +1
Query: 433 PPPPXXXGXGFWXPXPXPPPXXPAPXPSGXGXXXPPPXGGXXGX----PQXRGXPRXKXF 600
PPPP G PP S PPP G PQ R P
Sbjct: 314 PPPPSRRNRG-------KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Query: 601 XQRXXKGPXPXKXAXWRXFPXRAPPPXXXSKKXXPPVXXVANPXGAXKKPXXFPPXXPP- 777
G P + R PP + P + + N P PP PP
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPS 426
Query: 778 -PXGPPPXSXP 807
P PP + P
Sbjct: 427 APPSLPPSAPP 437
Score = 33.1 bits (72), Expect = 0.061
Identities = 43/166 (25%), Positives = 47/166 (28%), Gaps = 2/166 (1%)
Frame = +1
Query: 406 GXXXPXLKXPPPPXXXGXGFWXPXPXPPPXXPAPXPSGXGXXXPPPXGGXXGXPQXRGXP 585
G L PPPP P PP AP P PPP P P
Sbjct: 330 GSSNSSLPPPPPPPRSNAA--GSIPLPPQGRSAPPP-------PPPRSA----PSTGRQP 376
Query: 586 RXKXFXQRXXKGPXPXKXAXWRXFPXRAPPPXXXSKKXXPPVXXVANPXGAXKKPXXFPP 765
+ P P R P PP S+ PPV P P PP
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAP-ALPPLGNASRTSTPPVP--TPPSLPPSAPPSLPP 433
Query: 766 XXPP--PXGPPPXSXPXPXXRNXXXXXXXXXGXXGXXPXPPXXGIP 897
PP P G P + P P + G P PP P
Sbjct: 434 SAPPSLPMG-APAAPPLPP--SAPIAPPLPAGMPAAPPLPPAAPAP 476
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Frame = +3
Query: 438 PPXGXGXWXLGPP-PXPPPXXPRPXAFXXGXXXPPPPXGEXXXPPXPGXXP 587
PP G PP P PP P P P G PP P P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.7 bits (76), Expect = 0.020
Identities = 27/107 (25%), Positives = 29/107 (27%)
Frame = +1
Query: 472 PXPXPPPXXPAPXPSGXGXXXPPPXGGXXGXPQXRGXPRXKXFXQRXXKGPXPXKXAXWR 651
P P P P P PS P P G P+ P P A
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPP-VPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 652 XFPXRAPPPXXXSKKXXPPVXXVANPXGAXKKPXXFPPXXPPPXGPP 792
P PP PPV + K PP PP PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 34.3 bits (75), Expect = 0.026
Identities = 32/113 (28%), Positives = 32/113 (28%), Gaps = 1/113 (0%)
Frame = +1
Query: 472 PXPXPP-PXXPAPXPSGXGXXXPPPXGGXXGXPQXRGXPRXKXFXQRXXKGPXPXKXAXW 648
P P P P P PSG P P P G P P P A
Sbjct: 1103 PVPKPSVAVPPVPAPSG-APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP-SGAPP 1160
Query: 649 RXFPXRAPPPXXXSKKXXPPVXXVANPXGAXKKPXXFPPXXPPPXGPPPXSXP 807
P A PP PPV A P PP P G PP P
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 30.3 bits (65), Expect = 0.43
Identities = 27/112 (24%), Positives = 28/112 (25%)
Frame = +1
Query: 472 PXPXPPPXXPAPXPSGXGXXXPPPXGGXXGXPQXRGXPRXKXFXQRXXKGPXPXKXAXWR 651
P P P P P PS P P G P P P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV 1191
Query: 652 XFPXRAPPPXXXSKKXXPPVXXVANPXGAXKKPXXFPPXXPPPXGPPPXSXP 807
P APP S PPV + PP P PP P
Sbjct: 1192 PPPSEAPPVPKPSV-GVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 29.9 bits (64), Expect = 0.57
Identities = 35/130 (26%), Positives = 36/130 (27%)
Frame = +1
Query: 418 PXLKXPPPPXXXGXGFWXPXPXPPPXXPAPXPSGXGXXXPPPXGGXXGXPQXRGXPRXKX 597
P L PP P P P P P P+ PP G P P
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTST----PPVPKSSSGAPS--APPPV-- 1066
Query: 598 FXQRXXKGPXPXKXAXWRXFPXRAPPPXXXSKKXXPPVXXVANPXGAXKKPXXFPPXXPP 777
P P P APP S P VA P KP P P
Sbjct: 1067 --------PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP--VPKPSVAVPPVPA 1116
Query: 778 PXGPPPXSXP 807
P G PP P
Sbjct: 1117 PSGAPPVPKP 1126
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +2
Query: 467 GXPXXXPPXXPPP-PGLXVGXXVXPPPXGGXXVXPKXGGXP 586
G P PP PP P VG PPP V G P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 468 GPPPXPPPXXPRPXAFXXGXXXPPPPXGEXXXPPXP 575
G PP P P P PP P PP P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +3
Query: 423 LKKXXPPXGXGXWXLGPPPXPPPXXPRPXAFXXGXXXPPPPXG-EXXXPPXPGXXP 587
L K PP P P P P P P G PPPP G PP P P
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 0.75
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 433 PPPPXXXGXGFWXPXPXPPPXXPAPXPSGXGXXXPPP 543
PPPP G G P PPP PA G P P
Sbjct: 765 PPPPGVAGAG----PPPPPPPPPAVSAGGSRYYAPAP 797
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 824 IPWPPLSPLREXGALXPXPPXXVSPXGXGPXPP 922
IP PP +P+ G P PP V+ G P PP
Sbjct: 749 IPVPPPAPIM-GGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Frame = +1
Query: 670 PPPXXXSKKXXPPVXXVANPXGAXKKPXXFPPXXPPPX----GPPPXSXPXP 813
PPP P V P P PP PPP GPPP P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGP---PPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = +1
Query: 616 KGPXPXKXAXWRXFPXRAPPPXXXSKKXXPPVXXVANPXGAXKKPXXFPPXXPPPXGPPP 795
K P P A P AP P PP + P P PPP PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVP------PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.7 bits (66), Expect = 0.32
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = -3
Query: 604 GXKXFXGXXPGFGGNXXSPXGGGGNXXPXXKAXGRGXXGGGXGG 473
G F G GFGG GGG + GRG GG GG
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRG-GRGGARGGRGG 59
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.57
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +1
Query: 658 PXRAPPPXXXSKKXXPPVXXVANPXGAXKKPXXFPPXXPPP-XGPPPXSXPXPXXRN 825
P A PP + PP V P A P P PPP S P P R+
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +1
Query: 418 PXLKXPPPPXXXGXGFWXPXPXPPPXXPAPXPSGXGXXXPPP 543
P + P PP P PPP P P+G PPP
Sbjct: 1700 PQMSAPTPPPP-------PMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 471 PPPXPPPXXPRPXAFXXGXXXPPPPXGEXXXPPXP 575
PPP P P P A PP P G PP P
Sbjct: 1707 PPPPPMSVPPPPSA-------PPMPAGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +1
Query: 418 PXLKXPPPPXXXGXGFWXPXPXPPPXXPAPXPS 516
P + PPPP P PPP + PS
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.57
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 471 PPPXPPPXXPRPXAFXXGXXXPPPPXG 551
PP PPP P P PPPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 29.9 bits (64), Expect = 0.57
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 473 PXXXPPXXPPPPGLXVGXXVXPPPXGG 553
P PP PPPPG PPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 748 PXXFPPXXPPPXGPPPXSXPXP 813
P PP PPP G P S P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 748 PXXFPPXXPPPXGPPPXSXPXP 813
P PP PPP PP P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPP 27
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.57
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 628 PXKXAXWRXFPXRAPPPXXXSKKXXPPVXXVANPXGAXKKPXXFPPXXPPPXGPPPXSXP 807
P A P +APP P V +P A P PP P PP P
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.9 bits (64), Expect = 0.57
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +2
Query: 443 PGXGGLXFGXPXXXPPXXPPPPGLXVGXXVXPPPXGGXXVXPKXGGXPGKXFXPKGP 613
PG L P PP PPG+ P P G P G PG P P
Sbjct: 512 PGMPNLNMSQPPMVPPGMALPPGM-------PAPFPGYPAVPAMPGIPGATAPPGAP 561
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.5 bits (63), Expect = 0.75
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -3
Query: 586 GXXPGF-GGNXXSPXGGGGNXXPXXKAXGRGXXGGGXGGGPK 464
G GF GG S G GGN RG GGG GG +
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSR 179
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 586 GXXPGFGGNXXSPXGGGGNXXPXXKAXGRGXXGGGXGG 473
G GFGG P G G G G GG GG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG 225
Score = 27.1 bits (57), Expect = 4.0
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 586 GXXPGFGGNXXSPXG-GGGNXXPXXKAXGRGXXGGGXGGGP 467
G G GG P G GGG G G GG GGGP
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -3
Query: 604 GXKXFXGXXPGFGGNXXSPXGGGGNXXPXXKAXGRGXXGGGXGG 473
G F G GFGG P G GG G G GGG GG
Sbjct: 229 GPGGFEGGPGGFGGG---PGGFGGGLGGF--GGGPGGFGGGPGG 267
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -2
Query: 506 GAGXXGGGXGXGXQXPXPXXXGG-GGF 429
G G G G G G P P GG GGF
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGF 213
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 3.0
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Frame = -2
Query: 812 GXGXEXGGGPXGGGXXGGKXXGFLXAPXGFATXXTGG---XXFLEXXXGGGALXGKXRQX 642
G GGG GG G + GF T GG F GGGA R
Sbjct: 130 GHAFAGGGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAGPHARRSH 189
Query: 641 AXFXGXGP 618
F G P
Sbjct: 190 PSFGGSRP 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,415
Number of Sequences: 5004
Number of extensions: 36027
Number of successful extensions: 332
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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