Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B03
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       33   0.041
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    31   0.29 
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    30   0.50 
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    28   1.5  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    27   4.7  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    26   6.1  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 581 TQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHFTRKQPIQ 709
           T N    +  T Y+K+P    ++   PY+ ++ +++  +QP+Q
Sbjct: 647 THNPFQSQQATGYYKQPMQQQQNMQQPYYNQQNYNYQNQQPMQ 689


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 76  VRT*PLYHINFYFLNPKGCG*FNFA*NMFEL*HFCKNAAFFKYCCSLCSMS-SGFALTQ 249
           VR     H N Y   PKGCG  N   ++F+  ++  N+ +F+   S   +  S FA  Q
Sbjct: 365 VRNAVFLHQNIYINGPKGCGKSNLVHSLFD--YYSLNSIYFQMIVSCSEIDRSSFAKFQ 421


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +2

Query: 284 FSAFKNIEIQPRSLLPQNSLLANKQIMDISMNIYFTPTRSVTKFSLKKGKRKTVKAVIKR 463
           F  +KNIE+ P   +P   L     I D+S N   + +      ++      T+K V++R
Sbjct: 92  FKIWKNIELSPSRKIPPMVLHTYLDISDLSKNQTLSVSDGTHSHAINFNNMSTMKIVLER 151

Query: 464 F 466
           +
Sbjct: 152 W 152


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 326 LPQNSLLANKQIMDISMNIYFTPTRSVTKFSLKKGKRKTVKAVIKR 463
           LP N+   ++   D + N+     +S +   +KKGK+K  +   KR
Sbjct: 477 LPNNNKQKDRYFKDKTSNLSMKENKSFSAKKVKKGKKKNKRQAYKR 522


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 302 IEIQPRSLLPQNSLLANKQIMDISMNIYFTPTRSVTKFSLKKGKRKTVKAVIKRFFRLH 478
           I +Q  S L +   L++ +++D+S+    TP   + ++ L+KG     KA    F  +H
Sbjct: 183 ILVQAFSPLTRGYRLSDIRLLDLSLKYNKTPANILLRYCLQKGVSPIFKA--SSFVHIH 239


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 269 KDVRHFSA--FKNIEIQPRSLLPQNSLLANKQIMDISMNIY 385
           K++ HF++  FKNI+IQ     P+  LLA        +++Y
Sbjct: 93  KELDHFTSKPFKNIDIQNEQTNPKQLLLAEDPAFIPEVSLY 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,799
Number of Sequences: 5004
Number of extensions: 64282
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)