Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B03
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668...    29   4.9  
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547...    29   6.5  

>09_03_0167 +
           12965030-12965356,12966100-12966387,12966704-12966826,
           12967229-12967611,12967863-12968190,12968324-12968353,
           12968837-12968989,12969510-12969815
          Length = 645

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 503 IGRHKKLWKKSSANKRRLRQHVFCNAT 583
           IG HKK W++     RR +Q+VF  AT
Sbjct: 314 IGAHKKDWRRVRKVYRRSKQYVFVAAT 340


>07_01_0716 +
           5472618-5472818,5472943-5472985,5473672-5473761,
           5473863-5473938,5474435-5474504,5474911-5475075,
           5475261-5475404,5475547-5475651,5475876-5476022,
           5476463-5476531,5476882-5476989,5477392-5477483,
           5477559-5477598,5478129-5478221,5478386-5478958,
           5479596-5479610
          Length = 676

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +2

Query: 188 LRFLSTAARYARCLPASPLHNAITLTTKDVRHFSAFKNIEIQPRSLLPQNSLLANKQ 358
           L++ + + +  +CL    + N +  T   +R+ SA K+I I     +PQ+SLL++ +
Sbjct: 300 LKYENNSVKAVKCLNEM-VTNGLIHTEDCLRYMSALKDITILRFCAIPQSSLLSSTE 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,254,201
Number of Sequences: 37544
Number of extensions: 364780
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)