Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B03
         (880 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020651-1|AAH20651.1|  170|Homo sapiens mitochondrial ribosomal...   120   9e-27

>BC020651-1|AAH20651.1|  170|Homo sapiens mitochondrial ribosomal
           protein L35 protein.
          Length = 170

 Score =  120 bits (288), Expect = 9e-27
 Identities = 64/147 (43%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
 Frame = +2

Query: 203 TAARYARCLPASPLHNAITLTTKDVRHF-----SAFKNIEIQPRSLLPQNSLLANKQIMD 367
           T++ Y  C+  + L +A  L+T    H      S+   +    R+L   ++ +   ++  
Sbjct: 24  TSSTYRNCVKNASLISA--LSTGRFSHIQTPVVSSTPRLTTSERNLTCGHTSVILNRMAP 81

Query: 368 ISMNIYFTPTRSVTKFSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANK 547
           +  ++   P RS+T FS +KGKRKTVKAVI RF RLH G W+R K G  KKLWKK+ A K
Sbjct: 82  VLPSVLKLPVRSLTYFSARKGKRKTVKAVIDRFLRLHCGLWVRRKAGYKKKLWKKTPARK 141

Query: 548 RRLRQHVFCNATQNTLLDKMVTKYWKR 628
           +RLR+ VFCN TQ+ LLDKM T +WKR
Sbjct: 142 KRLREFVFCNKTQSKLLDKMTTSFWKR 168


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,267,089
Number of Sequences: 237096
Number of extensions: 2225594
Number of successful extensions: 3957
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3957
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)