Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B03
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-7|CAA86518.2|  158|Caenorhabditis elegans Hypothetical pr...    77   2e-14
AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z46381-7|CAA86518.2|  158|Caenorhabditis elegans Hypothetical
           protein M01F1.6 protein.
          Length = 158

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 34/88 (38%), Positives = 50/88 (56%)
 Frame = +2

Query: 410 KFSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQHVFCNATQN 589
           +F  K G+++  + V+ RF RL+ G WI    GRHK  + K    ++    +  C   Q 
Sbjct: 36  RFDQKVGRKRPAQDVLDRFKRLNNGMWIHAHPGRHKLRYMKDETWQKTSLYYETCTKEQC 95

Query: 590 TLLDKMVTKYWKRPKHYVEDPYAPYHTR 673
            +LDK++T YW RPKHY  DPY+ Y+ R
Sbjct: 96  EILDKLMTPYWLRPKHYPNDPYSAYNVR 123


>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 178 CKNAAFFKYCCSLCSMSSGFALTQCNYAYY*RCQTFLS 291
           C  +A    CCS+C  +     T+  YA+     TFLS
Sbjct: 17  CFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLS 54


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 178 CKNAAFFKYCCSLCSMSSGFALTQCNYAYY*RCQTFLS 291
           C  +A    CCS+C  +     T+  YA+     TFLS
Sbjct: 17  CFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLS 54


>Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical
           protein T05H10.6b protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 569 FCNATQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHFTRK 697
           +C++ +  L+ +M T  ++   H + DP   Y TREE    RK
Sbjct: 283 YCDSGKGPLMMEMAT--YRYHGHSMSDPGTSYRTREEIQEVRK 323


>Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical
           protein T05H10.6a protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 569 FCNATQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHFTRK 697
           +C++ +  L+ +M T  ++   H + DP   Y TREE    RK
Sbjct: 266 YCDSGKGPLMMEMAT--YRYHGHSMSDPGTSYRTREEIQEVRK 306


>U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical
           protein T22F3.3b protein.
          Length = 846

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 491 IRTKIGRHKKLWKKSSANKRRLRQHVFCNATQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 667
           I+    RH         N    R + F  A  NT+ D +V+++ +  +HY + DP   Y+
Sbjct: 26  IKKAFNRHLHFSIIKDRNVATDRDYYF--ALANTVRDHLVSRWIRTQQHYYDKDPKRVYY 83

Query: 668 TREEFHFTR 694
              EF+  R
Sbjct: 84  LSLEFYMGR 92


>U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical
           protein T22F3.3a protein.
          Length = 882

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 491 IRTKIGRHKKLWKKSSANKRRLRQHVFCNATQNTLLDKMVTKYWKRPKHYVE-DPYAPYH 667
           I+    RH         N    R + F  A  NT+ D +V+++ +  +HY + DP   Y+
Sbjct: 62  IKKAFNRHLHFSIIKDRNVATDRDYYF--ALANTVRDHLVSRWIRTQQHYYDKDPKRVYY 119

Query: 668 TREEFHFTR 694
              EF+  R
Sbjct: 120 LSLEFYMGR 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,567,012
Number of Sequences: 27780
Number of extensions: 359680
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)