Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B03
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   1.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   8.6  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 325 VTSKFTSSQQTNYGHFNEHLFYPNKI 402
           +++ +  S   NY ++N+ L+Y N I
Sbjct: 85  LSNNYKYSNYNNYNNYNKKLYYKNYI 110


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 331 SKFTSSQQTNYGHFNEHLFYPNKI 402
           + + +    NY ++N+ L+Y N I
Sbjct: 328 NNYNNYNNNNYNNYNKKLYYKNYI 351


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 358 NYGHFNEHLFYPNKI 402
           NY ++N+ L+Y N I
Sbjct: 332 NYNNYNKKLYYKNYI 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,797
Number of Sequences: 438
Number of extensions: 4918
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)