Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B02
(876 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q00403 Cluster: Transcription initiation factor IIB; n=... 346 4e-94
UniRef50_O16991 Cluster: Transcription initiation factor IIB; n=... 250 3e-65
UniRef50_Q54FD6 Cluster: Transcription initiation factor IIB; n=... 202 1e-50
UniRef50_A7PQV4 Cluster: Chromosome chr6 scaffold_25, whole geno... 191 2e-47
UniRef50_P48512 Cluster: Transcription initiation factor IIB-1; ... 190 4e-47
UniRef50_O13749 Cluster: Transcription initiation factor IIB; n=... 181 2e-44
UniRef50_Q8SRP3 Cluster: Transcription initiation factor IIB; n=... 173 5e-42
UniRef50_Q4P519 Cluster: Putative uncharacterized protein; n=1; ... 163 7e-39
UniRef50_Q2H1A6 Cluster: Putative uncharacterized protein; n=3; ... 162 1e-38
UniRef50_Q00VJ4 Cluster: Transcription initiation factor IIB [Or... 159 9e-38
UniRef50_Q0UK00 Cluster: Putative uncharacterized protein; n=1; ... 157 3e-37
UniRef50_A4RNY3 Cluster: Putative uncharacterized protein; n=1; ... 154 2e-36
UniRef50_A5DW20 Cluster: Transcription initiation factor IIB; n=... 154 3e-36
UniRef50_Q5KFF3 Cluster: Transcription initiation factor iib, pu... 144 3e-33
UniRef50_P29055 Cluster: Transcription initiation factor IIB; n=... 144 3e-33
UniRef50_A2Y747 Cluster: Putative uncharacterized protein; n=6; ... 128 1e-28
UniRef50_Q98S45 Cluster: Transcription initiation factor IIB; n=... 126 1e-27
UniRef50_Q8ZWS3 Cluster: Transcription initiation factor IIB; n=... 111 2e-23
UniRef50_UPI00015BAF36 Cluster: Transcription initiation factor ... 111 2e-23
UniRef50_A0RX88 Cluster: Transcription initiation factor TFIIB; ... 111 3e-23
UniRef50_Q977X4 Cluster: Transcription initiation factor IIB; n=... 105 1e-21
UniRef50_Q9LIA6 Cluster: Transcription initiation factor IIB (TF... 104 3e-21
UniRef50_Q649S4 Cluster: Transcription initiation factor IIB; n=... 104 3e-21
UniRef50_Q74NG0 Cluster: NEQ276; n=1; Nanoarchaeum equitans|Rep:... 103 4e-21
UniRef50_Q9HRE6 Cluster: Transcription initiation factor IIB 2; ... 103 6e-21
UniRef50_Q979P7 Cluster: Transcription initiation factor IIB 2; ... 101 2e-20
UniRef50_A7D4I1 Cluster: Transcription factor TFIIB, cyclin-rela... 101 2e-20
UniRef50_Q9HR45 Cluster: Transcription initiation factor IIB 4; ... 101 3e-20
UniRef50_A7D559 Cluster: Transcription factor TFIIB, cyclin-rela... 100 1e-19
UniRef50_Q4N5T9 Cluster: Transcription initiation factor TFIIB, ... 97 4e-19
UniRef50_Q8TX21 Cluster: Transcription initiation factor IIB; n=... 92 2e-17
UniRef50_Q5CWC3 Cluster: Transcription initiation factor TFIIB S... 89 2e-16
UniRef50_A7DQH1 Cluster: Transcription factor TFIIB, cyclin-rela... 87 7e-16
UniRef50_A7DMT5 Cluster: Transcription factor TFIIB, cyclin-rela... 87 7e-16
UniRef50_P58110 Cluster: Transcription initiation factor IIB 2; ... 87 7e-16
UniRef50_Q8TXP2 Cluster: Transcription initiation factor IIB; n=... 85 2e-15
UniRef50_A0RYL8 Cluster: Transcription initiation factor TFIIB; ... 85 2e-15
UniRef50_Q5UPT1 Cluster: Putative transcription initiation facto... 85 2e-15
UniRef50_Q9HNA2 Cluster: Transcription initiation factor IIB 1; ... 81 4e-14
UniRef50_Q8I237 Cluster: Transcription initiation factor TFIIB, ... 81 5e-14
UniRef50_Q1VP68 Cluster: TfbF; n=1; Psychroflexus torquis ATCC 7... 79 2e-13
UniRef50_A7AUT9 Cluster: Transcription initiation factor TFIIB, ... 78 3e-13
UniRef50_Q6Z467 Cluster: Putative Transcription initiation facto... 74 4e-12
UniRef50_A2BK13 Cluster: Transcription initiation factor IIB; n=... 73 7e-12
UniRef50_Q9HHH8 Cluster: Transcription initiation factor IIB 5; ... 73 7e-12
UniRef50_A7DP14 Cluster: Transcription factor TFIIB, cyclin-rela... 73 1e-11
UniRef50_O82494 Cluster: T12H20.13 protein; n=1; Arabidopsis tha... 73 1e-11
UniRef50_A3DNY2 Cluster: Zinc finger, TFIIB-type domain protein;... 73 1e-11
UniRef50_Q58192 Cluster: Transcription initiation factor IIB (TF... 69 1e-10
UniRef50_A0RXG8 Cluster: Transcription initiation factor TFIIB; ... 65 3e-09
UniRef50_Q8U2Z1 Cluster: Transcription initiation factor IIB cha... 60 5e-08
UniRef50_Q00X13 Cluster: Transcription factor IIB; n=2; Ostreoco... 60 1e-07
UniRef50_Q9VEL2 Cluster: CG31256-PA; n=7; Endopterygota|Rep: CG3... 60 1e-07
UniRef50_Q9Y942 Cluster: Transcription initiation factor IIB; n=... 60 1e-07
UniRef50_Q93WQ2 Cluster: TFIIB-related protein; n=9; Magnoliophy... 59 2e-07
UniRef50_Q1JSU6 Cluster: Transcription factor IIIb subunit, puta... 59 2e-07
UniRef50_Q92994 Cluster: Transcription factor IIIB 90 kDa subuni... 58 4e-07
UniRef50_O23215 Cluster: Transcription initiation factor like pr... 57 5e-07
UniRef50_A2D806 Cluster: Putative uncharacterized protein; n=1; ... 55 2e-06
UniRef50_A1RX53 Cluster: Zinc finger, TFIIB-type domain protein;... 54 4e-06
UniRef50_A5DLD8 Cluster: Putative uncharacterized protein; n=1; ... 54 5e-06
UniRef50_A6R8J6 Cluster: Putative uncharacterized protein; n=1; ... 53 1e-05
UniRef50_A1D6E9 Cluster: Transcription factor TFIIIB complex sub... 52 1e-05
UniRef50_P46070 Cluster: Transcription factor IIIB 70 kDa subuni... 52 1e-05
UniRef50_Q3LWB8 Cluster: Transcription initiation factor IIB; n=... 52 2e-05
UniRef50_Q17IB0 Cluster: Transcription factor IIIB 90 kDa subuni... 52 2e-05
UniRef50_Q5CRA9 Cluster: Cyclin domain protein; n=2; Cryptospori... 52 3e-05
UniRef50_Q8ZTC0 Cluster: Transcription initiation factor IIB; n=... 52 3e-05
UniRef50_Q4T2A5 Cluster: Chromosome undetermined SCAF10300, whol... 51 3e-05
UniRef50_A1CL18 Cluster: Transcription factor TFIIIB complex sub... 51 3e-05
UniRef50_Q4S6G3 Cluster: Chromosome 10 SCAF14728, whole genome s... 51 4e-05
UniRef50_Q92994-4 Cluster: Isoform 4 of Q92994 ; n=2; Homo sapie... 50 6e-05
UniRef50_Q1PEE4 Cluster: Transcription factor IIB family protein... 50 6e-05
UniRef50_P29056 Cluster: Transcription factor IIIB 70 kDa subuni... 50 6e-05
UniRef50_A3H9T5 Cluster: Zinc finger, TFIIB-type; n=1; Caldivirg... 50 1e-04
UniRef50_Q9P6R0 Cluster: Transcription factor IIIB 60 kDa subuni... 50 1e-04
UniRef50_P43072 Cluster: Transcription factor IIIB 70 kDa subuni... 50 1e-04
UniRef50_A5K3R6 Cluster: Transcription factor IIIb subunit, puta... 49 2e-04
UniRef50_Q54U85 Cluster: Transcription factor IIIB; n=1; Dictyos... 48 2e-04
UniRef50_Q4PHC2 Cluster: Putative uncharacterized protein; n=1; ... 48 3e-04
UniRef50_Q7R8B0 Cluster: Transcription factor iiib 70 kDa subuni... 47 5e-04
UniRef50_A7T629 Cluster: Predicted protein; n=2; Nematostella ve... 47 5e-04
UniRef50_Q8IKY2 Cluster: Transcription factor IIIb subunit, puta... 47 7e-04
UniRef50_A4RG97 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_A6RWP2 Cluster: Putative uncharacterized protein; n=2; ... 46 0.002
UniRef50_Q6C4S8 Cluster: Similar to sp|P29056 Saccharomyces cere... 45 0.002
UniRef50_Q7QYC8 Cluster: GLP_387_786_2216; n=2; Giardia intestin... 45 0.003
UniRef50_Q016X1 Cluster: Transcription factor IIIB; n=2; Ostreoc... 44 0.004
UniRef50_Q4UC65 Cluster: Genomic DNA chromosome 3; n=3; Piroplas... 44 0.004
UniRef50_Q2H1N9 Cluster: Putative uncharacterized protein; n=1; ... 44 0.005
UniRef50_Q4QA51 Cluster: Transcription factor, putative; n=3; Le... 44 0.007
UniRef50_A7QRG5 Cluster: Chromosome chr8 scaffold_150, whole gen... 42 0.021
UniRef50_Q20429 Cluster: Brf (Transcription factor) homolog prot... 42 0.027
UniRef50_UPI0000498CFC Cluster: hypothetical protein 5.t00016; n... 40 0.11
UniRef50_UPI000023CB24 Cluster: hypothetical protein FG04004.1; ... 40 0.11
UniRef50_Q5KFT1 Cluster: Transcription factor iiib 70 kd subunit... 40 0.11
UniRef50_UPI00004997AD Cluster: transcription initiation factor ... 39 0.14
UniRef50_Q0DJB2 Cluster: Os05g0305100 protein; n=3; Oryza sativa... 38 0.33
UniRef50_A3DN22 Cluster: Zinc finger, TFIIB-type domain protein;... 37 0.58
UniRef50_O94503 Cluster: RNA polymerase II holoenzyme cyclin-lik... 37 0.58
UniRef50_Q66IW8 Cluster: MGC84252 protein; n=2; Xenopus|Rep: MGC... 37 0.77
UniRef50_Q1FLV7 Cluster: Chromosome segregation ATPases-like; n=... 37 0.77
UniRef50_Q8JKF9 Cluster: Orf154; n=1; Heliothis zea virus 1|Rep:... 36 1.0
UniRef50_Q9HJE9 Cluster: Transcription initiation factor IIB rel... 36 1.0
UniRef50_Q9ZU39 Cluster: Putative transcription factor; n=1; Ara... 36 1.8
UniRef50_Q54MV3 Cluster: Putative uncharacterized protein; n=1; ... 36 1.8
UniRef50_Q9AVY2 Cluster: TFIIB related factor hBRF; n=1; Guillar... 35 2.4
UniRef50_Q16P27 Cluster: Sarcolemmal associated protein, putativ... 35 3.1
UniRef50_Q2H655 Cluster: Putative uncharacterized protein; n=1; ... 35 3.1
UniRef50_A0V175 Cluster: Major facilitator superfamily MFS_1; n=... 34 4.1
UniRef50_O22514 Cluster: Proline rich protein; n=1; Santalum alb... 34 4.1
UniRef50_Q387K4 Cluster: Transcription factor, putative; n=2; Tr... 34 4.1
UniRef50_Q8SRY7 Cluster: TRANSCRIPTION INITIATION FACTOR TFIII B... 34 4.1
UniRef50_Q9FJK7 Cluster: Cyclin-C1-2; n=2; Arabidopsis thaliana|... 34 4.1
UniRef50_UPI0000DA1AA5 Cluster: PREDICTED: hypothetical protein;... 34 5.5
UniRef50_Q0S381 Cluster: Putative uncharacterized protein; n=1; ... 34 5.5
UniRef50_Q3E7U7 Cluster: Uncharacterized protein At5g39230.1; n=... 34 5.5
UniRef50_Q0WVQ3 Cluster: Putative transcription factor; n=5; Ara... 34 5.5
UniRef50_UPI0000F2186B Cluster: PREDICTED: hypothetical protein;... 33 7.2
UniRef50_UPI0000DC0483 Cluster: UPI0000DC0483 related cluster; n... 33 7.2
UniRef50_Q9HXK1 Cluster: Putative uncharacterized protein; n=7; ... 33 7.2
UniRef50_Q97I30 Cluster: ATP-dependent Clp proteinase; n=5; Bact... 33 7.2
UniRef50_Q86I54 Cluster: Similar to Leishmania major. Ppg3; n=2;... 33 7.2
UniRef50_Q4Q3N5 Cluster: Putative uncharacterized protein; n=3; ... 33 7.2
UniRef50_Q9NUY6 Cluster: CDNA FLJ11052 fis, clone PLACE1004645; ... 33 7.2
UniRef50_Q498K4 Cluster: LOC494709 protein; n=5; cellular organi... 33 9.5
UniRef50_Q9GQB1 Cluster: Type IV collagen alpha 1 chain precurso... 33 9.5
UniRef50_Q8IHE4 Cluster: AT09308p; n=3; Sophophora|Rep: AT09308p... 33 9.5
UniRef50_Q4FW71 Cluster: Putative uncharacterized protein; n=3; ... 33 9.5
>UniRef50_Q00403 Cluster: Transcription initiation factor IIB; n=40;
Eumetazoa|Rep: Transcription initiation factor IIB -
Homo sapiens (Human)
Length = 316
Score = 346 bits (851), Expect = 4e-94
Identities = 166/206 (80%), Positives = 184/206 (89%), Gaps = 1/206 (0%)
Frame = +2
Query: 71 MASTSRIEA-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 247
MASTSR++A +V C HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60
Query: 248 GVDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFRE 427
DPSRVG +NPLLS GDLST+IG G G ASFD FG SKYQNRR +SS+DRA++NAF+E
Sbjct: 61 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKE 120
Query: 428 INTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEI 607
I TMADRINLP+ IVDR NNLFKQV++ K+LKGRANDAIASACLYIACRQEGVPRTFKEI
Sbjct: 121 ITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEI 180
Query: 608 CAVSKISKKEIGRCFKLILKALETSV 685
CAVS+ISKKEIGRCFKLILKALETSV
Sbjct: 181 CAVSRISKKEIGRCFKLILKALETSV 206
Score = 51.2 bits (117), Expect = 3e-05
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +1
Query: 721 FCSNLGLPNSVQRAATHIARKAGELDIVSGKS 816
FCSNL LP VQ AATHIARKA ELD+V G+S
Sbjct: 218 FCSNLCLPKQVQMAATHIARKAVELDLVPGRS 249
Score = 33.9 bits (74), Expect = 5.5
Identities = 18/69 (26%), Positives = 39/69 (56%)
Frame = +2
Query: 455 LPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKK 634
LPK + A ++ ++ + + GR+ ++A+A +Y+A + RT KEI ++ ++
Sbjct: 224 LPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 635 EIGRCFKLI 661
I + ++LI
Sbjct: 284 TIRQSYRLI 292
>UniRef50_O16991 Cluster: Transcription initiation factor IIB; n=8;
Bilateria|Rep: Transcription initiation factor IIB -
Caenorhabditis elegans
Length = 306
Score = 250 bits (613), Expect = 3e-65
Identities = 116/194 (59%), Positives = 155/194 (79%)
Frame = +2
Query: 104 VVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 283
V C HPD LIED+RAGD++C CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5 VQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64
Query: 284 PLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPK 463
PLLSGGDLST I G G + D+ ++ Q R+++++TDR + A I M++RI+LP+
Sbjct: 65 PLLSGGDLSTTIAVGFGGSDSDN-SLANAQ-RKSMNNTDRQMTAAMSLIREMSERIHLPR 122
Query: 464 TIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 643
I D A+ +FK V + K L+G+ N+A A+ACLYIACR++GVPRTFKEICAVS++SKKEIG
Sbjct: 123 NIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIG 182
Query: 644 RCFKLILKALETSV 685
RCFK+I+++LET++
Sbjct: 183 RCFKIIVRSLETNL 196
Score = 44.4 bits (100), Expect = 0.004
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +1
Query: 721 FCSNLGLPNSVQRAATHIARKAGELDIVSGKS 816
FC NL LPNS+Q AAT IA+ A ++D+V+G++
Sbjct: 208 FCGNLSLPNSIQAAATRIAKCAVDMDLVAGRT 239
Score = 36.3 bits (80), Expect = 1.0
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +2
Query: 449 INLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKIS 628
++LP +I A + K D + GR +IA+A +Y+A + R+ KEI V+ +
Sbjct: 212 LSLPNSIQAAATRIAKCAVDMDLVAGRTPISIAAAAIYMASQASAEKRSAKEIGDVAGAA 271
Query: 629 KKEIGRCFKLIL-KALE 676
+ + + +KL+ KALE
Sbjct: 272 EITVRQTYKLLYPKALE 288
>UniRef50_Q54FD6 Cluster: Transcription initiation factor IIB; n=1;
Dictyostelium discoideum AX4|Rep: Transcription
initiation factor IIB - Dictyostelium discoideum AX4
Length = 325
Score = 202 bits (492), Expect = 1e-50
Identities = 97/180 (53%), Positives = 129/180 (71%), Gaps = 1/180 (0%)
Frame = +2
Query: 125 DAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSN-EKSGVDPSRVGGPENPLLSGG 301
D +IEDY GD+IC CG+VVGDR++D SEWRTFSN E +G DP+RVGGP NPLL
Sbjct: 30 DPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPINPLLRDS 89
Query: 302 DLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRA 481
LST +G G S DS +++ QN+ + + DR L+ AF+EI MAD +NLP+T+ DRA
Sbjct: 90 ALSTTVGKG----SKDSGTLTRLQNKSALGTGDRNLLAAFKEIGRMADHMNLPQTVQDRA 145
Query: 482 NNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 661
N LF+ + D K+ KGR+ D + +A LYIACRQE + RTFKEI A++ + KKEI RC+K++
Sbjct: 146 NELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIM 205
Score = 39.9 bits (89), Expect = 0.083
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 721 FCSNLGLPNSVQRAATHIARKAGELDIVSGKS 816
FCS L LPN V++ A H+++ A ++ IV+GKS
Sbjct: 227 FCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKS 258
>UniRef50_A7PQV4 Cluster: Chromosome chr6 scaffold_25, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr6 scaffold_25, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 314
Score = 191 bits (465), Expect = 2e-47
Identities = 100/188 (53%), Positives = 128/188 (68%), Gaps = 4/188 (2%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
++ D+ AGD +CSECGLV+ ID SEWRTF+NE + DP RVGGP NPLL+ G LST
Sbjct: 15 VVLDHSAGDTVCSECGLVLEAHSIDEASEWRTFANESADNDPVRVGGPSNPLLADGGLST 74
Query: 314 IIG-PGRGDASFD--SFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRAN 484
+I P G S D S + ++QNR S+ DR+LI AF+ I TM DR+ L TI D AN
Sbjct: 75 LISKPSNGGPSNDFLSSSLGRWQNRG--SNPDRSLIQAFKTIATMCDRLGLVATIKDLAN 132
Query: 485 NLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLI 661
++K+V D K L+GR DAI +AC+YIACRQE PRT KEIC+V+ +KKEIGR + I
Sbjct: 133 EIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYI 192
Query: 662 LKALETSV 685
+K LE +
Sbjct: 193 VKQLEVEM 200
>UniRef50_P48512 Cluster: Transcription initiation factor IIB-1;
n=11; Magnoliophyta|Rep: Transcription initiation factor
IIB-1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 312
Score = 190 bits (463), Expect = 4e-47
Identities = 95/185 (51%), Positives = 125/185 (67%), Gaps = 2/185 (1%)
Frame = +2
Query: 125 DAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGD 304
+ L+ D+ AGD +CSECGLV+ ID SEWRTF+NE S DP+RVGGP NPLL+
Sbjct: 12 ETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVGGPTNPLLADSA 71
Query: 305 LSTIIG-PGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRA 481
L+T+I P F S + ++QNR S++DR LI AF+ I TM++R+ L TI DRA
Sbjct: 72 LTTVIAKPNGSSGDFLSSSLGRWQNRN--SNSDRGLIQAFKTIATMSERLGLVATIKDRA 129
Query: 482 NNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKL 658
N L+K++ D K+ +GR DA+ +ACLYIACRQE PRT KEIC ++ +KKEIGR
Sbjct: 130 NELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDY 189
Query: 659 ILKAL 673
I+K L
Sbjct: 190 IVKTL 194
>UniRef50_O13749 Cluster: Transcription initiation factor IIB; n=12;
Ascomycota|Rep: Transcription initiation factor IIB -
Schizosaccharomyces pombe (Fission yeast)
Length = 340
Score = 181 bits (441), Expect = 2e-44
Identities = 95/203 (46%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Frame = +2
Query: 80 TSRIEANKVVCYAHPDAP-LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSN--EKSG 250
TS + + D P L+E++ +GD +C CGLV+GDR+ID SEWRTFSN E SG
Sbjct: 11 TSMLSVKMICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASG 70
Query: 251 VDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFG--VSKYQNRRNISSTDRALINAFR 424
DPSRVG NPLL+G L T I +S+D G ++K Q R ++ L+ A++
Sbjct: 71 -DPSRVGKVANPLLNGSQLDTTI------SSYDGAGAMLAKAQGRSVQVRGEKNLLTAYK 123
Query: 425 EINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKE 604
EI M D I+LPK I D A L+K+V D K LKG+++ +I +AC+YIACRQ VPRTF E
Sbjct: 124 EIGAMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFME 183
Query: 605 ICAVSKISKKEIGRCFKLILKAL 673
IC ++ + KKEIGR +K + + L
Sbjct: 184 ICTLTNVPKKEIGRVYKTLQRML 206
Score = 37.5 bits (83), Expect = 0.44
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 443 DRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK 622
+R+ LP ++ A L ++ L GR+ +IA++ +Y+ G P+T KEI V+
Sbjct: 241 NRLMLPMSVQSAAAELARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEVTG 300
Query: 623 ISKKEIGRCFKLI 661
+S I +KL+
Sbjct: 301 VSDSTIRIAYKLL 313
Score = 34.7 bits (76), Expect = 3.1
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 721 FCSNLGLPNSVQRAATHIARKAGELDIVSGKS 816
FC+ L LP SVQ AA +AR+AG ++G+S
Sbjct: 239 FCNRLMLPMSVQSAAAELARRAGLQGTLAGRS 270
>UniRef50_Q8SRP3 Cluster: Transcription initiation factor IIB; n=2;
Microsporidia|Rep: Transcription initiation factor IIB -
Encephalitozoon cuniculi
Length = 312
Score = 173 bits (421), Expect = 5e-42
Identities = 82/181 (45%), Positives = 116/181 (64%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
++EDY+ G +C CG +VG+R+ID GSEWR+F + VDP R+G NP L L T
Sbjct: 23 IVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFGDSNK-VDPCRIGSASNPYLESEQLDT 81
Query: 314 IIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLF 493
+I G G +S+ +SK Q + ++ +RAL + I +R NL +TI+DRA+ +F
Sbjct: 82 MISTGGG---MNSYVLSKIQMKNSMRGPERALKHGMNLITAFCERSNLSRTIIDRAHYIF 138
Query: 494 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
K + + K LKG+ + I +AC+YIACRQE PRTFKEI ++ + K+EIGRCFKLI L
Sbjct: 139 KNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEISVMTAVQKREIGRCFKLISPHL 198
Query: 674 E 676
E
Sbjct: 199 E 199
Score = 34.7 bits (76), Expect = 3.1
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 721 FCSNLGLPNSVQRAATHIARKAGELDIVSGKS 816
FCS+L L +Q+ AT IA+ A EL ++GKS
Sbjct: 213 FCSDLNLNIKIQKIATEIAKAAHELGCLAGKS 244
>UniRef50_Q4P519 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 375
Score = 163 bits (395), Expect = 7e-39
Identities = 82/185 (44%), Positives = 120/185 (64%), Gaps = 3/185 (1%)
Frame = +2
Query: 125 DAP-LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSG- 298
D P L E++ +GD++C++CGLVVG+ +ID SEWRTF+NE G DPSRVG NPLL G
Sbjct: 53 DPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANE-DGDDPSRVGAASNPLLDGI 111
Query: 299 -GDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVD 475
L + IG G S + + NR + DR +++AF +I D I+LP+T+ D
Sbjct: 112 NEQLESRIGYRDGGTGA-SRDLQRTMNRAT-GTRDRNMLDAFEDIQRKCDSIHLPRTVSD 169
Query: 476 RANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFK 655
A +++V + K L+G+ DAI +A +Y+AC+ VPRTF EIC+++ +SKK IG+CFK
Sbjct: 170 VAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTSVSKKHIGQCFK 229
Query: 656 LILKA 670
+ +A
Sbjct: 230 EMQQA 234
Score = 33.9 bits (74), Expect = 5.5
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = +2
Query: 428 INTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEI 607
+ + + L I ++ +V + L GR+ IA+AC+Y + GV + K I
Sbjct: 272 VGRYCNHLGLEMRITRSTEDITARVRELGILAGRSPITIAAACIYFSTLLWGVDKGAKRI 331
Query: 608 CAVSKISKKEIGRCFKLILK 667
+ +S I FK +LK
Sbjct: 332 SQAAGVSDVTIKNSFKELLK 351
>UniRef50_Q2H1A6 Cluster: Putative uncharacterized protein; n=3;
Sordariomycetes|Rep: Putative uncharacterized protein -
Chaetomium globosum (Soil fungus)
Length = 353
Score = 162 bits (393), Expect = 1e-38
Identities = 82/187 (43%), Positives = 119/187 (63%), Gaps = 3/187 (1%)
Frame = +2
Query: 125 DAP-LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPENPLLSG 298
D P L+E+Y +GDM+C CGLV+ DR+ID SEWRTFS + +G D PSRVG N ++ G
Sbjct: 33 DPPRLVEEYSSGDMVCETCGLVL-DRIIDTRSEWRTFSGDDNGNDDPSRVGDAPNLMIDG 91
Query: 299 GDLSTIIG-PGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVD 475
L T I G+G + ++ QN+ N + L+ A+R+I + D IN + +
Sbjct: 92 DQLQTAIAFDGKGAKN-----LAHLQNKINQDKGTKVLLQAYRDIQALTDSINAGTQVAN 146
Query: 476 RANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFK 655
A ++FK V D K LKG++ +AI + C++IACRQ VPRTF+E+ ++K+SKKEIGR FK
Sbjct: 147 TAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFREVYGLTKVSKKEIGRVFK 206
Query: 656 LILKALE 676
+ L+
Sbjct: 207 QLESFLQ 213
Score = 41.9 bits (94), Expect = 0.021
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +2
Query: 479 ANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKL 658
A L ++ + +L GR+ ++A+AC+Y+A G PR+ K+I VS +S + ++
Sbjct: 262 ARRLAEKSSEVSDLAGRSPLSVAAACIYMASHLVGEPRSTKQISVVSSVSDGTVKTAYRY 321
Query: 659 ILKALET 679
+ A +T
Sbjct: 322 LYAAKDT 328
>UniRef50_Q00VJ4 Cluster: Transcription initiation factor IIB [Oryza
sativa; n=2; Ostreococcus|Rep: Transcription initiation
factor IIB [Oryza sativa - Ostreococcus tauri
Length = 395
Score = 159 bits (386), Expect = 9e-38
Identities = 84/193 (43%), Positives = 123/193 (63%), Gaps = 4/193 (2%)
Frame = +2
Query: 110 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSN---EKSGVDPSRVGGPE 280
C H ++ED+ +GD+IC+ECGLV+ R+ID SEWRTF + +K+G DPSR G
Sbjct: 30 CATH--TAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDKNGADPSRTVGAT 87
Query: 281 NPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLP 460
N +L+GG LST IG D ++++ +++ NR + D+ALI AF I AD + +
Sbjct: 88 NVMLTGGGLSTTIGKNP-DGTYNAT-LTRLHNRG--MNPDKALIAAFHSIGEFADAMGMN 143
Query: 461 KTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEIC-AVSKISKKE 637
+ + D A +L++ V + G++N A+ +ACLYIA RQEG+ RTFKE+C A + KE
Sbjct: 144 RVVKDGACDLYRMVTSAHSTLGKSNAAMYAACLYIAARQEGMTRTFKEVCGAAQGTTVKE 203
Query: 638 IGRCFKLILKALE 676
IGRC+K ILK +
Sbjct: 204 IGRCYKFILKVCD 216
>UniRef50_Q0UK00 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 360
Score = 157 bits (381), Expect = 3e-37
Identities = 76/177 (42%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPENPLLSGGDLS 310
L+E++ +GD +C CG V+G+R ID SEWRTFSN+ G D PSR+G NPLL G LS
Sbjct: 48 LVEEFSSGDTVCGSCGRVLGERAIDTRSEWRTFSNDDQGNDDPSRIGDAANPLLHGSQLS 107
Query: 311 TIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNL 490
T IG G G +S+ N+ N +++L A+ +I T+ D N+ K + A L
Sbjct: 108 TEIGFGDGGLRVRE--LSRAHNKSNHDKANKSLQAAYSQIATLCDSQNISKPTAETAKLL 165
Query: 491 FKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 661
F+ D K KG++ DAI + C++IACR G R+F+EI ++ +SKKE+GR FK +
Sbjct: 166 FRVTDDAKLFKGKSQDAIIAGCIFIACRNHGQQRSFREIFKMTNVSKKEVGRTFKAL 222
>UniRef50_A4RNY3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 371
Score = 154 bits (374), Expect = 2e-36
Identities = 75/178 (42%), Positives = 116/178 (65%), Gaps = 2/178 (1%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
L E+ +GD++C+ECGLVVG R++D+GSEWRTF+N+++G DPSRVG N + L T
Sbjct: 33 LQEEVSSGDIVCTECGLVVGARIVDMGSEWRTFANDEAGDDPSRVGDAGNEIYGPSALET 92
Query: 314 IIGPGRGD-ASFDSFGVSKYQNRRNISSTDRALINA-FREINTMADRINLPKTIVDRANN 487
+ R AS+ N++ + +A INA +I + D+I+ ++ +A +
Sbjct: 93 KVDMRRDQGASYKIMKSLNAANKKIQNEKGQAAINAGMAKIKDLVDKIHGGGNVIKQAQS 152
Query: 488 LFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 661
LF++V + K LKG++ DA + C++IACR E VPRTF+EI A++ +SKKEIGR +K +
Sbjct: 153 LFREVEEAKALKGKSADAAVAGCIFIACRMEKVPRTFREIHALTNVSKKEIGRTYKAL 210
Score = 40.3 bits (90), Expect = 0.063
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +2
Query: 479 ANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKL 658
A +L ++ +L GR+ ++A+AC+Y+ G PRT K+I V+ +S I +K
Sbjct: 272 AMHLARKSSSVADLAGRSPLSVAAACIYMMSHLIGEPRTSKDIAVVAGVSDGTIKTAYKF 331
Query: 659 ILKA 670
+L A
Sbjct: 332 LLAA 335
>UniRef50_A5DW20 Cluster: Transcription initiation factor IIB; n=6;
Saccharomycetales|Rep: Transcription initiation factor
IIB - Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 349
Score = 154 bits (373), Expect = 3e-36
Identities = 85/219 (38%), Positives = 134/219 (61%), Gaps = 15/219 (6%)
Frame = +2
Query: 65 TTMASTSRIEANKVV------------CYAHPDAPLIEDYRAGDMICSECGLVVGDRVID 208
TT +STS++EA++ V C P LIE + GD++C CGLV+ DR++D
Sbjct: 3 TTASSTSKLEASEYVGPNLNVTLTCPECKIFPP-DLIERFSEGDIVCGSCGLVLSDRMVD 61
Query: 209 VGSEWRTFSNE-KSGVDPSRVGGPENPLLSGGDLSTIIG--PGRGDASFDSFGVSKYQNR 379
SEWRTFSN+ ++G DPSRVG NPLL DLST+I P A + +++ Q +
Sbjct: 62 TRSEWRTFSNDDQNGDDPSRVGDAGNPLLDTEDLSTMISYVPDNTKAGRE---LTRAQQK 118
Query: 380 RNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACL 559
+ D AL A+ +I+ M D LPK + D A ++K V++ K+L+G++ ++I +A +
Sbjct: 119 SLVDKKDNALAAAYVKISQMCDGYQLPKIVQDGAKEVYKMVYEEKSLRGKSQESIMAASI 178
Query: 560 YIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALE 676
+I CR+ V R FKEI A++ + KKEIG+ F+++ + ++
Sbjct: 179 FIGCRKAKVARLFKEIWALTNVPKKEIGKVFRIMDRIIQ 217
Score = 39.9 bits (89), Expect = 0.083
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +1
Query: 721 FCSNLGLPNSVQRAATHIARKAGELDIVSGKS 816
FCS+LGL V AA HIAR+A E+ +++G+S
Sbjct: 249 FCSHLGLNTQVTNAAEHIARRAKEVGVLAGRS 280
>UniRef50_Q5KFF3 Cluster: Transcription initiation factor iib,
putative; n=3; Filobasidiella neoformans|Rep:
Transcription initiation factor iib, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 447
Score = 144 bits (349), Expect = 3e-33
Identities = 73/203 (35%), Positives = 117/203 (57%), Gaps = 9/203 (4%)
Frame = +2
Query: 101 KVVC-YAHPDAP-LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 274
K +C D P ++E+Y GD++C++CG ++GDR++D SEWRTF+ +++G DPSRVG
Sbjct: 101 KQICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGD 160
Query: 275 PENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI-------SSTDRALINAFREIN 433
NPLL L T+I G + +++ Q R N S+ L F I
Sbjct: 161 AGNPLLGSNHLDTMISHKDGRTGI-ARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIG 219
Query: 434 TMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICA 613
D + LP+ + +RA +++K V + + +KG+ A+ +AC+ ACR V RTF+E+C
Sbjct: 220 EKCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK 279
Query: 614 VSKISKKEIGRCFKLILKALETS 682
KISKKE+G+ F + +++S
Sbjct: 280 ALKISKKELGQVFNHVKSVVQSS 302
>UniRef50_P29055 Cluster: Transcription initiation factor IIB; n=9;
Saccharomycetales|Rep: Transcription initiation factor
IIB - Saccharomyces cerevisiae (Baker's yeast)
Length = 345
Score = 144 bits (349), Expect = 3e-33
Identities = 73/189 (38%), Positives = 110/189 (58%), Gaps = 1/189 (0%)
Frame = +2
Query: 110 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEK-SGVDPSRVGGPENP 286
C +P ++E + GD++C+ CGLV+ D+++D SEWRTFSN+ +G DPSRVG NP
Sbjct: 27 CKVYPPK-IVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNP 85
Query: 287 LLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKT 466
LL G +LST IG G + ++K Q + + D + AF +I + D LPK
Sbjct: 86 LLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKI 145
Query: 467 IVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 646
+ D A +K HD K LKG++ ++I +A + I CR+ V RTFKEI ++ + KE G+
Sbjct: 146 VKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGK 205
Query: 647 CFKLILKAL 673
++ L
Sbjct: 206 TLNIMKNIL 214
Score = 35.1 bits (77), Expect = 2.4
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 721 FCSNLGLPNSVQRAATHIARKAGELDIVSGKS 816
FCS+LGLP V +A + A+K E+ ++GKS
Sbjct: 242 FCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKS 273
>UniRef50_A2Y747 Cluster: Putative uncharacterized protein; n=6;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 319
Score = 128 bits (310), Expect = 1e-28
Identities = 77/193 (39%), Positives = 113/193 (58%), Gaps = 13/193 (6%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVD--PSRVGGPENPLL----S 295
++ D+ GD IC+EC LV+ R ID SEWRTF+N+ + D P+RVG +P L
Sbjct: 21 VVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGDRADPFLPDHVG 80
Query: 296 GGDLSTIIGPGRGDASFDSFGVSKYQNRRNI--SSTDRALINAFREINTMADRINLPKTI 469
G ++ P + ++ D+ + R ++ S + AL+ AFR I MADR+ L TI
Sbjct: 81 GTTIAYSAAPPKNASAADAAAPLLTRRRVDVVGPSPENALVAAFRGIADMADRLGLVATI 140
Query: 470 VDRANNLFKQVHDGKN--LKGRANDAIASACLYIACRQEGVPRTFKEICAVS---KISKK 634
DRA +FK++ + +GR D + +ACL+IACR EG+PRT+KE+ +V+ +KK
Sbjct: 141 RDRAKEVFKKLGEAPKGFPRGRNRDTVYAACLFIACRNEGMPRTYKELASVTAEGAAAKK 200
Query: 635 EIGRCFKLILKAL 673
EIGR LI K L
Sbjct: 201 EIGRLTTLIKKHL 213
>UniRef50_Q98S45 Cluster: Transcription initiation factor IIB; n=1;
Guillardia theta|Rep: Transcription initiation factor
IIB - Guillardia theta (Cryptomonas phi)
Length = 325
Score = 126 bits (303), Expect = 1e-27
Identities = 68/191 (35%), Positives = 108/191 (56%), Gaps = 11/191 (5%)
Frame = +2
Query: 137 IEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTI 316
+EDY+ GD+IC CG ++ +ID GSEWR FS++ +P R+G PENPLL G ST+
Sbjct: 13 LEDYKQGDIICKNCGFIIESHIIDFGSEWRIFSDDNRSNNPVRIGLPENPLL-GNSSSTL 71
Query: 317 IGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFK 496
I G ++ + + K QN+ + +++ L + F I+ + K I ++ LFK
Sbjct: 72 ISKGLKGSNKINEKLLKAQNQNDNCKSEKYLASVFSIISFFLTNGSFSKLIKEKVQELFK 131
Query: 497 QVHDGKNLKG---------RAND--AIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 643
+D LK R D +I +A ++I C+ E +PR+FKEI ++K+ KK+IG
Sbjct: 132 NYYDYLTLKSNGSRIKTTLRKKDTFSIIAASIFIICKNESIPRSFKEISELTKVKKKDIG 191
Query: 644 RCFKLILKALE 676
+++ KALE
Sbjct: 192 NRVRIMEKALE 202
>UniRef50_Q8ZWS3 Cluster: Transcription initiation factor IIB; n=14;
Thermoprotei|Rep: Transcription initiation factor IIB -
Pyrobaculum aerophilum
Length = 333
Score = 111 bits (268), Expect = 2e-23
Identities = 58/193 (30%), Positives = 110/193 (56%), Gaps = 10/193 (5%)
Frame = +2
Query: 137 IEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTI 316
+ +Y G+ +C CG VV ++++D+G EWR F++E+ G +R G P L+S L+T+
Sbjct: 46 VYNYERGEAVCIVCGAVVQEQLLDLGPEWRAFTSEEKG-QRARTGAPLTRLISEA-LTTV 103
Query: 317 IGPGRGDASFDSFGVS---------KYQNRRNI-SSTDRALINAFREINTMADRINLPKT 466
I D S + K+Q R + +S +R I A +E+ + + +P+
Sbjct: 104 IDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSAMGIPRP 163
Query: 467 IVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 646
+++A +++Q + + ++GR+ +A+A+A LY+ACR +PR E+ +K S++E+ R
Sbjct: 164 CIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVAR 223
Query: 647 CFKLILKALETSV 685
C++L+L+ L V
Sbjct: 224 CYRLLLRELNVKV 236
Score = 35.5 bits (78), Expect = 1.8
Identities = 20/86 (23%), Positives = 42/86 (48%)
Frame = +2
Query: 428 INTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEI 607
I+ +A+++ L +V A ++ ++ G+ +A+A +YIA G RT K+
Sbjct: 245 ISRIAEQLKLSGEVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDF 304
Query: 608 CAVSKISKKEIGRCFKLILKALETSV 685
+ +++ + +K + KAL V
Sbjct: 305 AVAAGVTEVTVRNRYKELAKALNIKV 330
>UniRef50_UPI00015BAF36 Cluster: Transcription initiation factor IIB
(TFIIB); n=1; Ignicoccus hospitalis KIN4/I|Rep:
Transcription initiation factor IIB (TFIIB) - Ignicoccus
hospitalis KIN4/I
Length = 316
Score = 111 bits (267), Expect = 2e-23
Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 10/208 (4%)
Frame = +2
Query: 92 EANKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 271
EA ++ C ++ + G+ +C+ CG +V DR +D G EWR F+ E+ R G
Sbjct: 5 EAFRLRCPVCGSTDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERE-RRGRTG 63
Query: 272 GPENPLLSGGDLSTIIGPGRGDASFDSFG---------VSKYQNRRNISS-TDRALINAF 421
P +P L LST+I DA + K+Q R I + DR L A
Sbjct: 64 APLSPTLHDHGLSTVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAM 123
Query: 422 REINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFK 601
E++ MA+ +NLPK I + A ++++ + ++GR+ +++ +A +Y ACR PRT
Sbjct: 124 NELDRMANLLNLPKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLD 183
Query: 602 EICAVSKISKKEIGRCFKLILKALETSV 685
EI ++++KE+ RC++LI K L+ V
Sbjct: 184 EIAKKLEVNRKEVARCYRLITKELKLKV 211
Score = 41.5 bits (93), Expect = 0.027
Identities = 24/89 (26%), Positives = 46/89 (51%)
Frame = +2
Query: 407 LINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGV 586
+ +A I + + + L I++ A + +++ G+ IA+A +YIA Q+G
Sbjct: 213 IADAMDHIPRIGEALKLRGDIIEYAMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGE 272
Query: 587 PRTFKEICAVSKISKKEIGRCFKLILKAL 673
RT KEI V+ +++ + +K I+K L
Sbjct: 273 RRTQKEIANVAGVTEVTVRNRYKEIMKVL 301
>UniRef50_A0RX88 Cluster: Transcription initiation factor TFIIB;
n=9; Crenarchaeota|Rep: Transcription initiation factor
TFIIB - Cenarchaeum symbiosum
Length = 328
Score = 111 bits (266), Expect = 3e-23
Identities = 57/191 (29%), Positives = 102/191 (53%), Gaps = 10/191 (5%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
++ D G++ C+ CG V+ D++ D+G+EWR+FS +++ SR G + + LST
Sbjct: 46 IVTDENQGELFCATCGFVITDKLEDMGAEWRSFSGDETS--RSRSGAGTSLAMHDMGLST 103
Query: 314 IIGPGRGDASFDSFGVSKYQNRRNI----------SSTDRALINAFREINTMADRINLPK 463
+IG D + S + + SS DR L A E++ M D++ L
Sbjct: 104 VIGSANKDTTGKPLSASMRTSIERLRTWDSRTQAHSSADRNLRQALNEMDKMKDKLALAD 163
Query: 464 TIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 643
++++A ++++ + K ++GR+ + +ACLY ACR PRT +I I +K++
Sbjct: 164 AVIEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDIAKGINIRRKDVA 223
Query: 644 RCFKLILKALE 676
RC++LI + LE
Sbjct: 224 RCYRLIFRELE 234
>UniRef50_Q977X4 Cluster: Transcription initiation factor IIB; n=3;
Desulfurococcales|Rep: Transcription initiation factor
IIB - Pyrodictium occultum
Length = 310
Score = 105 bits (252), Expect = 1e-21
Identities = 64/194 (32%), Positives = 110/194 (56%), Gaps = 9/194 (4%)
Frame = +2
Query: 122 PDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP-ENPLLSG 298
P ++ D G+ IC+ G VV + VID G EWR ++ E+ SRVG P + L
Sbjct: 18 PPEYIVFDEERGEYICTLTGEVVEETVIDTGPEWRAYTPEER-TRRSRVGSPLTHTLPDY 76
Query: 299 GDLSTIIG----PGR---GDASFDSFGVSKYQNR-RNISSTDRALINAFREINTMADRIN 454
G L+TI G GR ++ + + Q + R +S ++ + A REI + + +N
Sbjct: 77 GILTTISGYRDANGRKLEARLRIEASRLRRLQAKLRATTSIEKNIEQAAREITRLVEALN 136
Query: 455 LPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKK 634
LP+ I+D A +++Q + ++GR+ +++A+A +Y ACR G+PR+ +I V K +K
Sbjct: 137 LPRGIIDTAMMIYRQAAEKGLVRGRSLESMAAAAVYAACRIRGIPRSIDDIAEVVKGGRK 196
Query: 635 EIGRCFKLILKALE 676
E+ RC++LI++ L+
Sbjct: 197 EVARCYRLIVRELK 210
Score = 35.9 bits (79), Expect = 1.4
Identities = 20/89 (22%), Positives = 43/89 (48%)
Frame = +2
Query: 407 LINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGV 586
+++ R ++ + + L + RA + Q G+ +A+A +YIA + G
Sbjct: 215 IVDPVRYVSRIVSALRLSPAVERRAAEILVQARKMGLTAGKDPAGLAAAAIYIAALELGE 274
Query: 587 PRTFKEICAVSKISKKEIGRCFKLILKAL 673
RT KEI A + +++ + +K +++ L
Sbjct: 275 RRTQKEIAAAAGVTEVTVRNRYKELVQKL 303
>UniRef50_Q9LIA6 Cluster: Transcription initiation factor IIB
(TFIIB)-like protein; n=2; Arabidopsis thaliana|Rep:
Transcription initiation factor IIB (TFIIB)-like protein
- Arabidopsis thaliana (Mouse-ear cress)
Length = 336
Score = 104 bits (249), Expect = 3e-21
Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 13/197 (6%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNE--KSGVDPSRVGGPENPLLSGGDL 307
++ D+ +GD ICSECGLV+ +I+ EWRTF+++ S DP+RVG NP L GDL
Sbjct: 15 MVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNRVGAATNPFLKSGDL 74
Query: 308 STIIGPGRGDAS--FDSFGVSK-YQNRRNISSTDRALI-NAFREINTMADRINLPKTIVD 475
TII + AS +S ++ + + + LI AF EI M D ++L I
Sbjct: 75 VTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQRMTDALDLDIVINS 134
Query: 476 RANNLFKQVHDGKNLK---GRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 643
RA + + N K G+ +AI +A + ACR+ + RT KEI V+ + KK+I
Sbjct: 135 RACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKEIAEVANGVDKKDIR 194
Query: 644 R---CFKLILKALETSV 685
+ K +L++ +TSV
Sbjct: 195 KESLVIKRVLESHQTSV 211
>UniRef50_Q649S4 Cluster: Transcription initiation factor IIB; n=3;
environmental samples|Rep: Transcription initiation
factor IIB - uncultured archaeon GZfos34G5
Length = 306
Score = 104 bits (249), Expect = 3e-21
Identities = 61/181 (33%), Positives = 99/181 (54%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
+I D R ++ C++CG+V+ + ++D+G EWR++ E++ R G P + + L T
Sbjct: 23 VITDSRHAELYCADCGIVIAENIVDLGPEWRSYDEEQAS-KRIRTGPPMSYRIHDKGLGT 81
Query: 314 IIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLF 493
PG + G+S I S+D+ L A EI+ MA + LP I + + L+
Sbjct: 82 PT-PGLPARTRRLRGIS-------IDSSDKTLAFALVEIDRMACALGLPNNIKEATSVLY 133
Query: 494 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
++ +KGR+ + + SA LYI CRQ GVPRT KE+ VS+ K+I R + +L+ L
Sbjct: 134 RKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKKIRRAYIFLLRRL 193
Query: 674 E 676
E
Sbjct: 194 E 194
>UniRef50_Q74NG0 Cluster: NEQ276; n=1; Nanoarchaeum equitans|Rep:
NEQ276 - Nanoarchaeum equitans
Length = 315
Score = 103 bits (248), Expect = 4e-21
Identities = 62/197 (31%), Positives = 105/197 (53%), Gaps = 6/197 (3%)
Frame = +2
Query: 101 KVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 280
K+VC +I D + G+ IC +CG V+ D+G EWR F +E VD R G P
Sbjct: 8 KLVCPNCGSENIIYDPKTGEYICKDCGYVIKIE-FDLGPEWRHFDDET--VDRRRGGAPL 64
Query: 281 NPLLSGGDLSTIIGPG------RGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMA 442
+ G LST IG +G+ + K+ +R +S+ DR L A E+ M
Sbjct: 65 SYAKVGRGLSTEIGDTSEIYKLKGELKQKFMRMRKWHSRVALSAIDRNLKIALHELKKMV 124
Query: 443 DRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK 622
D++N+PK + + A ++++V + +GR + + + LY+ R+ +PRT +E+ +
Sbjct: 125 DKLNMPKYVEEEAARIYQKVVEKGLARGRNINTLLAGTLYLVIREYNIPRTLEELEKATG 184
Query: 623 ISKKEIGRCFKLILKAL 673
ISKK+I + ++LI++ L
Sbjct: 185 ISKKDIAKAYRLIVREL 201
Score = 39.9 bits (89), Expect = 0.083
Identities = 22/78 (28%), Positives = 39/78 (50%)
Frame = +2
Query: 440 ADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVS 619
A +NLP + A + ++ + GR IA+A LYIA + G K+I ++
Sbjct: 218 ASELNLPPEVTATAIEIIEEAKKKNIVSGRGPQGIAAAALYIAAIKHGKYVPLKKIGEIA 277
Query: 620 KISKKEIGRCFKLILKAL 673
K+++ I +K I+ +L
Sbjct: 278 KVTEVTIKNRYKEIINSL 295
>UniRef50_Q9HRE6 Cluster: Transcription initiation factor IIB 2;
n=30; Halobacteriaceae|Rep: Transcription initiation
factor IIB 2 - Halobacterium salinarium (Halobacterium
halobium)
Length = 325
Score = 103 bits (247), Expect = 6e-21
Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 10/194 (5%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
+I+D G+ +C +CGLVV + ID G EWR F++ + + SRVG P ++ LST
Sbjct: 39 VIDDEEHGESVCVDCGLVVEENGIDRGPEWRAFNSTEKD-EKSRVGAPTTNMMHDKGLST 97
Query: 314 IIGPGRGDASFDSFGVSKYQNRRNI----------SSTDRALINAFREINTMADRINLPK 463
IG DA +S ++ Q + + +S +R L A EI MA + LPK
Sbjct: 98 NIGWQDKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIERMASALGLPK 157
Query: 464 TIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 643
+ + A+ ++++ L GR+ + +A+A LY + RQ PR+ E+ VS+I + E
Sbjct: 158 EVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEVANVSRIDEMEFK 217
Query: 644 RCFKLILKALETSV 685
R ++ I++ L V
Sbjct: 218 RTYRYIVRELSLEV 231
>UniRef50_Q979P7 Cluster: Transcription initiation factor IIB 2;
n=18; Euryarchaeota|Rep: Transcription initiation factor
IIB 2 - Thermoplasma volcanium
Length = 313
Score = 101 bits (243), Expect = 2e-20
Identities = 57/194 (29%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
LI DY G++IC++CG V+ D ID G EWR F +++ +R G P L L+T
Sbjct: 25 LIRDYEHGELICADCGAVIEDSFIDQGPEWRAFDSDQDE-RRARTGSPMTYLSHDKGLAT 83
Query: 314 IIGPGRGDA---------SFDSFGVSKYQNRRNISST-DRALINAFREINTMADRINLPK 463
I D + V K+ R +S+ +R L A + +N + ++ +PK
Sbjct: 84 EISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQLLNDIGAKLGIPK 143
Query: 464 TIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 643
I + + ++++ + ++GR+ ++I A +Y ACR+ +PRT EI S+++KK+IG
Sbjct: 144 DIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIAKASEVNKKKIG 203
Query: 644 RCFKLILKALETSV 685
+ ++ + K L+ ++
Sbjct: 204 KAYRHLAKELDLNL 217
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = +2
Query: 419 FREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTF 598
F I ++++L K + + ++ +Q G+ IA+A +YIA + G PRT
Sbjct: 223 FSYIAQFCNKLDLDKQAIVISEDIVRQAMSMGISSGKGPTGIAAAAIYIASVKVGKPRTQ 282
Query: 599 KEICAVSKISKKEIGRCFKLILKALETSV 685
KEI +S +++ I +K I KAL S+
Sbjct: 283 KEIARISGVTEVTIRNRYKEISKALNISI 311
>UniRef50_A7D4I1 Cluster: Transcription factor TFIIB,
cyclin-related; n=1; Halorubrum lacusprofundi ATCC
49239|Rep: Transcription factor TFIIB, cyclin-related -
Halorubrum lacusprofundi ATCC 49239
Length = 333
Score = 101 bits (242), Expect = 2e-20
Identities = 61/183 (33%), Positives = 101/183 (55%), Gaps = 10/183 (5%)
Frame = +2
Query: 155 GDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGRG 334
G++I E GL+V + ID G EWR F N SRVG P + L+T I
Sbjct: 54 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 112
Query: 335 DASFDSFG---------VSKYQNR-RNISSTDRALINAFREINTMADRINLPKTIVDRAN 484
DA S + K+Q R R + +R L A EI+ MA + +P+++ + A+
Sbjct: 113 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 172
Query: 485 NLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 664
++++ + ++GR+ + +++A LY ACR+EG+PR+ +EI VS++ +KEIGR ++ I
Sbjct: 173 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSRVERKEIGRTYRYIS 232
Query: 665 KAL 673
+ L
Sbjct: 233 QEL 235
>UniRef50_Q9HR45 Cluster: Transcription initiation factor IIB 4;
n=4; Euryarchaeota|Rep: Transcription initiation factor
IIB 4 - Halobacterium salinarium (Halobacterium
halobium)
Length = 328
Score = 101 bits (241), Expect = 3e-20
Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 10/194 (5%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
L+ D G+ C ECGLVV + ID G EWR F+ ++ + SRVG P ++ LST
Sbjct: 39 LVTDEDRGETTCGECGLVVEEDGIDHGPEWRAFNAQEQD-EKSRVGAPTTNMMHDKGLST 97
Query: 314 IIGPGRGDASFDSFG---------VSKYQNR-RNISSTDRALINAFREINTMADRINLPK 463
IG DA ++ + K+ R R +S +R L A EI MA LP
Sbjct: 98 NIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGEIERMASAFGLPD 157
Query: 464 TIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 643
++ + A+ ++++ L GR+ + +A++ LY A RQ PR+ E+ +VS++ + EI
Sbjct: 158 SVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEVASVSRVDRGEIA 217
Query: 644 RCFKLILKALETSV 685
R ++ + + L V
Sbjct: 218 RTYRYVARELSLEV 231
>UniRef50_A7D559 Cluster: Transcription factor TFIIB,
cyclin-related; n=1; Halorubrum lacusprofundi ATCC
49239|Rep: Transcription factor TFIIB, cyclin-related -
Halorubrum lacusprofundi ATCC 49239
Length = 330
Score = 99.5 bits (237), Expect = 1e-19
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 4/216 (1%)
Frame = +2
Query: 152 AGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPG- 328
A + +C++CGLVV ID G EWR+F ++ + +P R G P LST IG
Sbjct: 62 AAERVCTDCGLVVEADRIDHGPEWRSFDDDDT--NPKRTGAPLTRSRHDRGLSTEIGRST 119
Query: 329 --RGDASFDSFGVSKYQNRRNISST-DRALINAFREINTMADRINLPKTIVDRANNLFKQ 499
+G + NR IS+ DR + A+ EI + + LP ++ D A LF
Sbjct: 120 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALELPDSVRDTACTLFAS 179
Query: 500 VHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 679
D L+GR+ + A+AC+Y+ACR V RT EICA +K ++ E F + + L
Sbjct: 180 AQDESLLRGRSLEGFAAACVYVACRTADVARTVGEICAEAKATEAEHRAAFDAMNRELGL 239
Query: 680 SV*SHYNSRFYVSGFARIWVCQIQCNAQLHISQGKL 787
+ + Y+ FA ++ C+A + G+L
Sbjct: 240 PI-APTGPAEYLPRFA----SELDCDADVERRAGEL 270
>UniRef50_Q4N5T9 Cluster: Transcription initiation factor TFIIB,
putative; n=2; Theileria|Rep: Transcription initiation
factor TFIIB, putative - Theileria parva
Length = 342
Score = 97.5 bits (232), Expect = 4e-19
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 5/185 (2%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNE---KSGVDPSRVGGPENPLLSGGD 304
++ D+ G+ +C CG V+ + +I EWR F+ E ++G + SRVG + L G
Sbjct: 24 VVVDHVEGNQLCLSCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRVGELNDVWLDGTS 83
Query: 305 LSTIIGPGRGDASFDSFGVSKYQN-RRNISSTDRALINAFREINTMADRINLPKTIVDRA 481
+T IG + + QN N S+DRAL +F + T+AD +N+ +V+RA
Sbjct: 84 STTFIGGSKK--------MQHLQNLMTNYDSSDRALKTSFTLLRTIADSLNIRDQVVERA 135
Query: 482 NNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKL 658
+ K+++ +L+ RAN A LY+ACR+ V R+ +E+ + ++ KE+GR
Sbjct: 136 KEILKELNQMGHLRSRANSLNTLAVLYLACRESSVSRSLRELVIYDRSLTVKELGRAINR 195
Query: 659 ILKAL 673
+ K L
Sbjct: 196 LKKVL 200
>UniRef50_Q8TX21 Cluster: Transcription initiation factor IIB; n=1;
Methanopyrus kandleri|Rep: Transcription initiation
factor IIB - Methanopyrus kandleri
Length = 307
Score = 91.9 bits (218), Expect = 2e-17
Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 6/194 (3%)
Frame = +2
Query: 110 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 289
C A A ++ D G+ +C+ CGLV D VID G EWR F N SR G P
Sbjct: 15 CPACGSAEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRTGEPVKLR 73
Query: 290 LSGGDLSTIIGPGRGDASFDSFG----VSKYQNRRNIS-STDRALINAFREINTMADRIN 454
L +STII D+ + + R +S S +R AF E+ +A ++
Sbjct: 74 LPDKGISTIIDRELRDSGGKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKLQ 133
Query: 455 LPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKIS-K 631
LP+++ + A +++++ + ++GR +++ A ++ AC++ VPRT +EI +S +
Sbjct: 134 LPESVRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSDE 193
Query: 632 KEIGRCFKLILKAL 673
EI R ++++ + L
Sbjct: 194 NEILRAYRVLQRRL 207
Score = 40.3 bits (90), Expect = 0.063
Identities = 22/78 (28%), Positives = 42/78 (53%)
Frame = +2
Query: 440 ADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVS 619
A ++ + + + +A + ++ + G+ +A+A LYIA EG RT KEI V+
Sbjct: 224 ASKLGVSENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEIAEVA 283
Query: 620 KISKKEIGRCFKLILKAL 673
++++ I +K I +AL
Sbjct: 284 RVTEVTIRNRYKEICEAL 301
>UniRef50_Q5CWC3 Cluster: Transcription initiation factor TFIIB
Sua7p; ZnR+2cyclins; n=2; Cryptosporidium|Rep:
Transcription initiation factor TFIIB Sua7p;
ZnR+2cyclins - Cryptosporidium parvum Iowa II
Length = 456
Score = 88.6 bits (210), Expect = 2e-16
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNE-KSGVDPSRVGGPENPLLSGGDLS 310
++ D ++G IC+ CG+VV DRVI+ EWR+FSN+ G SR+G + L G S
Sbjct: 162 VVYDSKSGSEICTRCGVVVEDRVINEEQEWRSFSNDGNDGNSKSRIGSVNDVWLDDGTDS 221
Query: 311 TIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNL 490
++ GD + +S+DR + F ++ +A+ +L I++R +
Sbjct: 222 QLL---VGDKKL----MKTMLKHNTQASSDRMIKEVFNQLRQIANSFSLHDNIIERCKEI 274
Query: 491 FKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILK 667
K+ + LK + A +Y+ACR+EGV RT KE+ + + IS++E+ R + K
Sbjct: 275 VKEQSNLNILKSGKKHVL--AIVYLACREEGVSRTVKELLSFDRTISERELVRSINKLKK 332
Query: 668 AL 673
L
Sbjct: 333 DL 334
>UniRef50_A7DQH1 Cluster: Transcription factor TFIIB,
cyclin-related; n=1; Candidatus Nitrosopumilus maritimus
SCM1|Rep: Transcription factor TFIIB, cyclin-related -
Candidatus Nitrosopumilus maritimus SCM1
Length = 306
Score = 86.6 bits (205), Expect = 7e-16
Identities = 49/203 (24%), Positives = 102/203 (50%), Gaps = 7/203 (3%)
Frame = +2
Query: 131 PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLS 310
P I D G+++C CGL++ + D E ++ E + +R G + + LS
Sbjct: 22 PAITDSERGEIVCGGCGLILVQNLADASYENNGYTQEDF-MKQARTGPATSLTMFDKGLS 80
Query: 311 TIIGPGRGDASFDSFGVSKYQ-------NRRNISSTDRALINAFREINTMADRINLPKTI 469
T+IG + + +KY+ ++R+ S L AF +++M ++++P +
Sbjct: 81 TVIGSNKDSSGNALPSKTKYEFNRLRTWDQRSKSRKTATLSKAFTLLHSMKTKLSVPDNV 140
Query: 470 VDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 649
V+ A +++++ K +GR ++ SA LY ACR+ +PRT +I + ++ + R
Sbjct: 141 VENAAYIYRKIVSAKLTRGRTMASLISASLYAACRENNIPRTLDDIAKAGNVERRILSRD 200
Query: 650 FKLILKALETSV*SHYNSRFYVS 718
+ I+K L ++ + Y++ ++S
Sbjct: 201 LRTIIKKLGLNL-NQYDTASFIS 222
>UniRef50_A7DMT5 Cluster: Transcription factor TFIIB,
cyclin-related; n=1; Candidatus Nitrosopumilus maritimus
SCM1|Rep: Transcription factor TFIIB, cyclin-related -
Candidatus Nitrosopumilus maritimus SCM1
Length = 303
Score = 86.6 bits (205), Expect = 7e-16
Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 9/201 (4%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
++ D G++ C+ CG V+ +RV+D G E + E+ + SRVG + + LST
Sbjct: 16 IVTDLNTGEIACTNCGAVLSERVVDSGPESLGMTGEEYQTN-SRVGRKISLKMIDMGLST 74
Query: 314 II--------GPGRGDASFDSFGVSKYQNRRNIS-STDRALINAFREINTMADRINLPKT 466
II G G + + F + +R + S ST ++ AF ++ ++ ++ LP+
Sbjct: 75 IIEAKDKDATGKGLSNENKRMFYRLRMWDRNSRSASTAKSFQKAFTMLDGISAKLGLPEP 134
Query: 467 IVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 646
++++ LF+++ K L GR+ I A +YI CR PRT +++ ++KK I R
Sbjct: 135 VIEQTAYLFRKIAAKKILAGRSTAGILCAAIYITCRMTNTPRTLQDVANAGNVNKKNIQR 194
Query: 647 CFKLILKALETSV*SHYNSRF 709
++ + + L+ + ++ + F
Sbjct: 195 TYRFLARELDITPEIYHPTEF 215
>UniRef50_P58110 Cluster: Transcription initiation factor IIB 2;
n=4; Sulfolobaceae|Rep: Transcription initiation factor
IIB 2 - Sulfolobus solfataricus
Length = 293
Score = 86.6 bits (205), Expect = 7e-16
Identities = 46/183 (25%), Positives = 81/183 (44%)
Frame = +2
Query: 113 YAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLL 292
Y D + D G +C+ C V+ D +D G +WR + N K + RVG P P +
Sbjct: 5 YCKTDNAITYDVEKGMYVCTNCASVIEDSAVDPGPDWRAY-NAKDRNEKERVGSPSTPKV 63
Query: 293 SGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIV 472
TIIG GR + + + QN+ +S D+ L+ +N + ++ LP+ +
Sbjct: 64 HDWGFHTIIGYGRAKDRLKTLKMQRMQNKIRVSPKDKKLVTLLSILNDESSKLELPEHVK 123
Query: 473 DRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 652
+ A+ + +++ + K + A LY +C+ +PR +E IS E
Sbjct: 124 ETASLIIRKMVETGLTKRIDQYTLIVAALYYSCQVNNIPRHLQEFKVRYSISSSEFWSAL 183
Query: 653 KLI 661
K +
Sbjct: 184 KRV 186
>UniRef50_Q8TXP2 Cluster: Transcription initiation factor IIB; n=1;
Methanopyrus kandleri|Rep: Transcription initiation
factor IIB - Methanopyrus kandleri
Length = 341
Score = 85.4 bits (202), Expect = 2e-15
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 4/216 (1%)
Frame = +2
Query: 92 EANKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVG 271
E+ VC L D + G+++C +CG VV D +ID G EWR F N R G
Sbjct: 5 ESEHRVCPKCGSTNLERDEKHGELVCRDCGTVV-DYLIDYGPEWRAF-NADQRAQRERTG 62
Query: 272 GPENPLLSGGDLSTIIGP----GRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTM 439
P + TII GR + + ++ + R + +A I +
Sbjct: 63 APISERHPHKLGDTIIDDRDTRGRRLVDWRFRRLKRWDRWISNDPVSRNIRSAVELIERV 122
Query: 440 ADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVS 619
+ N+P++IVD A ++++ + ++GR+ + A+A L++AC++ PRT KEI +
Sbjct: 123 CSQANIPRSIVDEAIRIYRKAVEKDLVRGRSIENTAAAALFMACKKRKHPRTIKEIAKLF 182
Query: 620 KISKKEIGRCFKLILKALETSV*SHYNSRFYVSGFA 727
I+ K+I R +++L+ L + + + + Y+S FA
Sbjct: 183 GITPKDINRTHRVLLRHLNERMPAP-DPKQYLSRFA 217
>UniRef50_A0RYL8 Cluster: Transcription initiation factor TFIIB;
n=1; Cenarchaeum symbiosum|Rep: Transcription initiation
factor TFIIB - Cenarchaeum symbiosum
Length = 304
Score = 85.0 bits (201), Expect = 2e-15
Identities = 58/210 (27%), Positives = 109/210 (51%), Gaps = 11/210 (5%)
Frame = +2
Query: 131 PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLS 310
P+I D G+M C CG V+ R+ D R S E+ SR G + ++ LS
Sbjct: 22 PIITDSERGEMFCGGCGSVLVQRMEDAAYGERGHSWEEFS-SRSRTGPGTSLAMNDRGLS 80
Query: 311 TIIG----------PGRGDASFDSFGVSKYQNR-RNISSTDRALINAFREINTMADRINL 457
T+IG GR +F+ V ++R R++S+ +ALI ++N M ++ +
Sbjct: 81 TMIGRNVDSSGNALSGRTRQTFNRLRVWDQRSRSRSVSNLGKALI----QLNAMGIKLGV 136
Query: 458 PKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 637
P+ V++A ++++ K +GR ++ +A LY ACR+ G+PRT ++ VS + ++
Sbjct: 137 PEPAVEKAAYIYRKAVGEKLTRGRTVSSLIAASLYAACRESGIPRTLDDMARVSNVERRI 196
Query: 638 IGRCFKLILKALETSV*SHYNSRFYVSGFA 727
+ R + +L+ L S+ + Y++ +++ A
Sbjct: 197 LSRDLRTMLRKLGMSL-TQYDTSSFITKIA 225
>UniRef50_Q5UPT1 Cluster: Putative transcription initiation factor
IIB-like protein; n=1; Acanthamoeba polyphaga
mimivirus|Rep: Putative transcription initiation factor
IIB-like protein - Mimivirus
Length = 461
Score = 85.0 bits (201), Expect = 2e-15
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 12/195 (6%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS-GVDPSRVGGPENPLLSGGDLS 310
L+ED + ++CSECG++ D ++D G EWR + N+ G +R G P N
Sbjct: 154 LLEDQSSSVLVCSECGMI-NDDLLDHGPEWRQYYNDDGRGEGVNRCGCPSNFFFPKSSQG 212
Query: 311 TIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNL 490
TI+ G G + + Q + +R+L + F +I+T+ + N+P+ I D A L
Sbjct: 213 TILA-GTGSGR-----LKRKQKWNSTVYKERSLNDVFEKISTICSKSNIPRIIADTAKIL 266
Query: 491 FKQVHDGKN-----------LKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 637
+K++ D K+ ++G +I +AC+Y AC PRT KEI I +K+
Sbjct: 267 YKKLSDCKHKSGNNVGKQIIIRGHNRISIIAACIYKACEMNKNPRTVKEIARFFGIDEKK 326
Query: 638 IGRCFKLILKALETS 682
+ + K K ++ +
Sbjct: 327 VTKGNKQFEKIMKNT 341
>UniRef50_Q9HNA2 Cluster: Transcription initiation factor IIB 1;
n=4; Halobacteriaceae|Rep: Transcription initiation
factor IIB 1 - Halobacterium salinarium (Halobacterium
halobium)
Length = 287
Score = 81.0 bits (191), Expect = 4e-14
Identities = 56/165 (33%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Frame = +2
Query: 164 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG-----PG 328
+C++CGLVV D ID G EWRTFS++ P R G P LST IG G
Sbjct: 22 VCADCGLVVTDAPIDHGPEWRTFSDDPDHA-PERTGAPLTRSRHDRGLSTEIGYSARLTG 80
Query: 329 RGDASFDSFGVSKYQNRRNI-SSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVH 505
R F + + R I S D I F EI + + + D+A LF
Sbjct: 81 RKRRKFAR--LRRQHKRATIPSKADYNRIYGFTEIRRLIGTFGIGTGLRDQACTLFASAQ 138
Query: 506 DGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 640
L GR + A+A +Y CR GV RT EI A ++ ++ E+
Sbjct: 139 TAGLLHGRTIEGFAAAGVYATCRTNGVTRTLDEIAAAARATRPEL 183
>UniRef50_Q8I237 Cluster: Transcription initiation factor TFIIB,
putative; n=8; Plasmodium|Rep: Transcription initiation
factor TFIIB, putative - Plasmodium falciparum (isolate
3D7)
Length = 367
Score = 80.6 bits (190), Expect = 5e-14
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 3/183 (1%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNE--KSGVDPSRVGGPENPLLSGGDL 307
+I D G IC+ CG+VV +++ EWR F N+ D +RVG + L
Sbjct: 59 IICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVSDIWLENNLT 118
Query: 308 STIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANN 487
ST S + I+ D+ LI+AF + + D L +++RA
Sbjct: 119 STTFIKS-------SKKLQHLNMMTQINKNDQTLISAFNILKLICDTFFLRSNVIERAKE 171
Query: 488 LFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISK-KEIGRCFKLIL 664
+ K++ D + LK R N+ A +Y+ACR+ G ++ KE+ + K K++G+ +
Sbjct: 172 ITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIKELITFDRSYKEKDLGKTINKLK 231
Query: 665 KAL 673
K L
Sbjct: 232 KVL 234
>UniRef50_Q1VP68 Cluster: TfbF; n=1; Psychroflexus torquis ATCC
700755|Rep: TfbF - Psychroflexus torquis ATCC 700755
Length = 309
Score = 78.6 bits (185), Expect = 2e-13
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 10/187 (5%)
Frame = +2
Query: 143 DYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG 322
D G++ C +CGLV + V D G+EW +N +G D SRVG P L+ L+T I
Sbjct: 22 DVTRGEITCGDCGLVAEENVPDPGAEW---TNRDNGEDRSRVGRPMTYTLADKGLNTTID 78
Query: 323 PGRGDASFDS-FGVSKYQNR---RNISSTDRALINAFREINTMA------DRINLPKTIV 472
+ S G+S R R +R+ RE N + DR LP +
Sbjct: 79 VRDLNTGIASRHGMSSQARRDWRRRRVIDERSKTRKSRERNLVKANQFIRDRSGLPAPLQ 138
Query: 473 DRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 652
+ A L++++ + GR+ + +AC Y+ RQEG+PR + I++K++ R
Sbjct: 139 EEAARLYRRLSGEGFVTGRSIAGVTAACTYLVARQEGLPRQIPAVAQAFDITEKDLSRLI 198
Query: 653 KLILKAL 673
+ + + L
Sbjct: 199 RQVSRRL 205
Score = 34.7 bits (76), Expect = 3.1
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +2
Query: 461 KTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 640
+T +D N K HD +G+ +A+A +Y A G PRT E+CAV+ +S+ +
Sbjct: 231 RTPLDELWNTIKP-HDDV-WQGKKPMGVAAALIYKAASAAGSPRTQSEVCAVANVSEVTL 288
Query: 641 GRCFKLI 661
++I
Sbjct: 289 RGLLRVI 295
>UniRef50_A7AUT9 Cluster: Transcription initiation factor TFIIB,
putative; n=1; Babesia bovis|Rep: Transcription
initiation factor TFIIB, putative - Babesia bovis
Length = 253
Score = 78.2 bits (184), Expect = 3e-13
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 5/209 (2%)
Frame = +2
Query: 62 LTTMASTSRIEANKVVCYAHPDAPLIE-DYRAGDMICSECGLVVGDRVIDVGSEWRTFSN 238
++T+ + ++ C DA +I D G IC CG V + +I EWR+FS
Sbjct: 1 MSTLRDRILAKRKRLRCVDCGDAGMIVVDQTEGSQICVNCGRVAENVLISEQQEWRSFSA 60
Query: 239 EKSGV---DPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRAL 409
E S D +RVG + + +T IG R + + ++ N+R++ S
Sbjct: 61 ESSSGKNNDRNRVGEANDVWMETTSGTTFIGASRKMQNTHNMVINDNDNKRHLKS----- 115
Query: 410 INAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVP 589
AF + + D +NL +++R+ + K++ + +LKGR N + +Y+A R+ GV
Sbjct: 116 --AFVILRQVDDTMNLSDLVIERSKEMLKELDNAGHLKGRCNMLNVLSIVYMASREVGVC 173
Query: 590 RTFKEICAV-SKISKKEIGRCFKLILKAL 673
R+ E+ +KIS++++ R + K L
Sbjct: 174 RSLDELTIYEAKISQRDLSRAIGRMKKLL 202
>UniRef50_Q6Z467 Cluster: Putative Transcription initiation factor
IIB; n=5; Oryza sativa|Rep: Putative Transcription
initiation factor IIB - Oryza sativa subsp. japonica
(Rice)
Length = 362
Score = 74.1 bits (174), Expect = 4e-12
Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Frame = +2
Query: 131 PLIEDYRAGDMICSECGLVVGD--RVIDVGSEWRTF-----SNEKSGVDPSRVGGP---- 277
P++ D+ GD IC+ C +G+ WR S+ S VGG
Sbjct: 19 PMVLDHATGDAICTGCAFDLGNGANACPEPPRWRAAAGHGDSDGDRSSSSSSVGGDVSPA 78
Query: 278 -ENPLLSGGD-LSTIIGPG------RGDA----SFDSFGVSKYQNRRNISSTDRALINAF 421
+PLL GG+ ++ +G RG + G + R + T +AL F
Sbjct: 79 AADPLLQGGEGVACSVGAPPVQPRVRGAVVPPKQMRAGGAVPPKVRCGVPDTSKALAEGF 138
Query: 422 REINTMADRINLPKTIVDRANNLFKQVHDGKNL-KGRANDAIASACLYIACRQEGVPRTF 598
I MA R+ L + DRA + +++ + + KGR+ DA+ +ACL+ ACR EG PRT
Sbjct: 139 DAIVGMASRLGLADKVSDRAKEVLRKLEEARACPKGRSRDALYAACLHAACRVEGAPRTL 198
Query: 599 KEICAVSK---ISKKEIGRCFKLILKAL 673
KE+ A + +K+++G+ I + L
Sbjct: 199 KELIAATSDAAATKRDLGKFINAIKRHL 226
>UniRef50_A2BK13 Cluster: Transcription initiation factor IIB; n=1;
Hyperthermus butylicus DSM 5456|Rep: Transcription
initiation factor IIB - Hyperthermus butylicus (strain
DSM 5456 / JCM 9403)
Length = 297
Score = 73.3 bits (172), Expect = 7e-12
Identities = 46/189 (24%), Positives = 91/189 (48%)
Frame = +2
Query: 161 MICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGRGDA 340
++C+ CG V+ D +D G EWR+++ E+ + SRVG P + L+T + R D
Sbjct: 30 LVCTNCGYVIDDAPLDTGPEWRSYT-EEDRLLRSRVGAPLTERVHDKGLTTYVQRNRRDP 88
Query: 341 SFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNL 520
+ + + Q + + + +I +++N ++NLP + + L K+++ +
Sbjct: 89 R--AMKIVQLQTQLR-THGQKKMIKLLQDLNHFVAKLNLPPRVAETMAKLVKKLYLMGVI 145
Query: 521 KGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV*SHYN 700
K +A IA R EG T +++ +S++EI + ++ I+ L+ V +
Sbjct: 146 KKNNEHVYLAAAAVIASRIEGHSLTMRDVAETLGLSRQEIWKAYRKIVTKLKVRVATPPR 205
Query: 701 SRFYVSGFA 727
+ YVS A
Sbjct: 206 PQMYVSKIA 214
>UniRef50_Q9HHH8 Cluster: Transcription initiation factor IIB 5;
n=4; Halobacteriaceae|Rep: Transcription initiation
factor IIB 5 - Halobacterium salinarium (Halobacterium
halobium)
Length = 307
Score = 73.3 bits (172), Expect = 7e-12
Identities = 48/183 (26%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Frame = +2
Query: 152 AGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPG- 328
+ + +C++CGL++ ++ ID G EW + + R G P P LST+IG G
Sbjct: 34 SAETVCADCGLIIDEQSIDRGPEWHRDDADTA----KRTGAPLTPARHDRGLSTVIGSGQ 89
Query: 329 --RGDASFDS-----FGVSKYQNRRNISST-DRALINAFREINTMADRINLPKTIVDRAN 484
RG A + + Q+R ST +R L + EI +A + L ++ D+A
Sbjct: 90 DARGTALSSEKRRRLARMRREQSRGRWRSTKERNLGHGLTEIRRIASALGLADSVRDQAC 149
Query: 485 NLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLIL 664
LF+ + + LKGR+ +A+A+A ++ ACR G ++ ++++ + + + ++
Sbjct: 150 QLFRTAQNERLLKGRSIEAMAAASVFGACRCNGESWLIDDVAPMAQVGQNRVENAYTVLN 209
Query: 665 KAL 673
+ L
Sbjct: 210 EEL 212
>UniRef50_A7DP14 Cluster: Transcription factor TFIIB,
cyclin-related; n=1; Candidatus Nitrosopumilus maritimus
SCM1|Rep: Transcription factor TFIIB, cyclin-related -
Candidatus Nitrosopumilus maritimus SCM1
Length = 309
Score = 72.9 bits (171), Expect = 1e-11
Identities = 42/201 (20%), Positives = 100/201 (49%), Gaps = 9/201 (4%)
Frame = +2
Query: 110 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 289
C+ + I D G++ CS+CG V+ ++ ID S + ++ ++ ++ G P
Sbjct: 8 CFKNNHTSPITDITTGEICCSDCGTVIVEKTID-RSNGLPANTKEDFMNRTQYGPPTKIA 66
Query: 290 LSGGDLSTIIGPGRGDASFDSF--GVSKYQNRRNI----SSTDRA---LINAFREINTMA 442
+S +++I D++ ++ +R + S +DRA L+ AF ++ A
Sbjct: 67 ISDMSKTSMISKKNQDSAGQKLHSDAKRHFSRLRLWDSRSKSDRAERNLVKAFSILDAYA 126
Query: 443 DRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK 622
+ +P+ + A ++++ + ++G + + + +Y+ C+Q G+PR+ + VS
Sbjct: 127 SNLGIPENAKEHAAYIYRKALEKNLIRGSSIHTMVAGSVYVTCKQLGIPRSADDTTRVSN 186
Query: 623 ISKKEIGRCFKLILKALETSV 685
IS++ + + +K ++K L+ +
Sbjct: 187 ISRRRLSKAYKRLVKNLDLKI 207
>UniRef50_O82494 Cluster: T12H20.13 protein; n=1; Arabidopsis
thaliana|Rep: T12H20.13 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 182
Score = 72.5 bits (170), Expect = 1e-11
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 2/177 (1%)
Frame = +2
Query: 137 IEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTI 316
+ +Y+ GD IC ECG V+ + +ID +D G NP L G L TI
Sbjct: 17 VVNYKNGDTICIECGHVIENNIID-------------DLD----GASTNPNLKSGHLPTI 59
Query: 317 IGPGRGDASFDSFGVSKYQNRRNISSTDRALIN-AFREINTMADRINLPKTIVDRANNLF 493
I G +S + + + QN + + +I A+ EI M + + L I + A +
Sbjct: 60 IFKLSGKSSSLASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEALGLTFGISNTACKIL 119
Query: 494 KQVHDGKNLKG-RANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLI 661
++ D KNL+G ++ + +A + ACRQ +P+T KEI AV+ + KEI + KL+
Sbjct: 120 SKL-DKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVANVDMKEINKAVKLL 175
>UniRef50_A3DNY2 Cluster: Zinc finger, TFIIB-type domain protein;
n=1; Staphylothermus marinus F1|Rep: Zinc finger,
TFIIB-type domain protein - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 294
Score = 72.5 bits (170), Expect = 1e-11
Identities = 48/192 (25%), Positives = 88/192 (45%)
Frame = +2
Query: 86 RIEANKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSR 265
+ E N++VC +I DY + +C+ CG V+ D +ID G E R N ++ +R
Sbjct: 2 KYEHNQLVCPYCGSHSVIFDYETNEYVCTRCGAVIEDHLIDHGFEHRYIDNFEN----AR 57
Query: 266 VGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMAD 445
G + + + R + +S+ Q + + ++ + A R +N
Sbjct: 58 TSGSYTFRVHDSGIGSTEFKARYAGKW--LNMSRLQKKIRVEKRNKIVEKALRHLNNYIR 115
Query: 446 RINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKI 625
+N PK + + A + ++ +GKN K + +A A LYIA + G+P++ K I
Sbjct: 116 ILNPPKYVSETAGLILQKSVEGKNYKDKTLKLLAIASLYIAYKVHGIPKSAKMFAKELGI 175
Query: 626 SKKEIGRCFKLI 661
+ K++ R K I
Sbjct: 176 TLKDLWRAEKKI 187
>UniRef50_Q58192 Cluster: Transcription initiation factor IIB
(TFIIB) [Contains: Endonuclease Mja Tfb (EC 3.1.-.-)
(Mja Tfb intein) (Mja TFIIB intein)]; n=17;
Euryarchaeota|Rep: Transcription initiation factor IIB
(TFIIB) [Contains: Endonuclease Mja Tfb (EC 3.1.-.-)
(Mja Tfb intein) (Mja TFIIB intein)] - Methanococcus
jannaschii
Length = 673
Score = 69.3 bits (162), Expect = 1e-10
Identities = 36/126 (28%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = +2
Query: 353 FGVSKYQNRRNIS-STDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGR 529
+ + K+Q R +S + +R L A E++ + ++ LP+ + + A +++ + ++GR
Sbjct: 466 YRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLPRHVRENAAIIYRGAVEKGLIRGR 525
Query: 530 ANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV*SHYNSRF 709
+ + + +A +Y ACR+ VPRT EI S++ +KEIGR ++ + + L + + N
Sbjct: 526 SIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLARELNIKL-TPTNPID 584
Query: 710 YVSGFA 727
YV FA
Sbjct: 585 YVPRFA 590
Score = 54.0 bits (124), Expect = 5e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +2
Query: 89 IEANKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 268
+ ++VC +++DY +++C++CG V+ +++ D+G EWR F +E+ + RV
Sbjct: 35 VREEEIVCPICGSKEVVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFDHEQK-IKRCRV 93
Query: 269 GGP 277
G P
Sbjct: 94 GAP 96
>UniRef50_A0RXG8 Cluster: Transcription initiation factor TFIIB;
n=2; Thermoprotei|Rep: Transcription initiation factor
TFIIB - Cenarchaeum symbiosum
Length = 321
Score = 64.9 bits (151), Expect = 3e-09
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 10/194 (5%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
L++D + G+ +CS CG+V+ +++ D G E T +R G ++T
Sbjct: 16 LVDDAQNGETVCSSCGIVISEQLEDRGPE-PTGGGTDGVARLARATGMTTYAQHDLGITT 74
Query: 314 IIGPGRGDASFDSFG---------VSKYQNRRNISST-DRALINAFREINTMADRINLPK 463
I R D S + K+Q R +S+ +R L N +I + LP+
Sbjct: 75 DIAASRTDFSGKRINPAVNGQMNNLRKWQQRIRVSTPRERRLANVLAKIGEICQGSMLPR 134
Query: 464 TIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 643
I++ A+ +++ + ++KGR+ +++ A +Y+AC++ GV R+ EIC + + +
Sbjct: 135 NILETASVIYRNLDARVDVKGRSVASMSVAAVYMACKRCGVVRSIDEICG-NACPARNVK 193
Query: 644 RCFKLILKALETSV 685
KL K T V
Sbjct: 194 ATSKLAAKYYRTMV 207
>UniRef50_Q8U2Z1 Cluster: Transcription initiation factor IIB chain
b homolog; n=2; Pyrococcus|Rep: Transcription initiation
factor IIB chain b homolog - Pyrococcus furiosus
Length = 283
Score = 60.5 bits (140), Expect = 5e-08
Identities = 30/94 (31%), Positives = 52/94 (55%)
Frame = +2
Query: 392 STDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIAC 571
S++R L+ A E+ ++ + LPK + + A L+++ + + +AC+Y C
Sbjct: 87 SSERNLVLAMSELRRLSGMLKLPKYVEEEAAYLYREAAKRGLTRRIPIETTVAACIYATC 146
Query: 572 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
R VPRT EI + SK KKEI + F++I++ L
Sbjct: 147 RLFKVPRTLNEIASYSKTEKKEIMKAFRVIVRNL 180
Score = 39.5 bits (88), Expect = 0.11
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Frame = +2
Query: 380 RNISSTDRALINAFRE-INTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASAC 556
RN++ T + L+ + ++ AD + L + + R ++ ++ ++ G+ ++ +A
Sbjct: 178 RNLNLTPKMLLARPTDYVDKFADELELSERVRRRTVDILRRANEEGITSGKNPLSLVAAA 237
Query: 557 LYIACRQEGVPRTFKEICAVSKISKKEIGRCFK-LILK 667
LYIA EG R+ KEI V+ +S+ + +K L++K
Sbjct: 238 LYIASLLEGERRSQKEIARVTGVSEMTVRNRYKELVMK 275
>UniRef50_Q00X13 Cluster: Transcription factor IIB; n=2;
Ostreococcus|Rep: Transcription factor IIB -
Ostreococcus tauri
Length = 728
Score = 59.7 bits (138), Expect = 1e-07
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Frame = +2
Query: 155 GDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVD-PSRVGGPENPLLSGGDLSTIIGPGR 331
G C++CG ++ +RV+ G TF+ G P + PEN + G +I R
Sbjct: 18 GFTCCTQCGKILHERVVFSGET--TFTKNAQGASVPDGMFVPENGIAHG-----VIRASR 70
Query: 332 GDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINL-PKT-IVDRANNLFKQVH 505
G + GV + S +R L EI +ADR+ + P+ +VD A+ L+K
Sbjct: 71 GGRLY---GVQ-------LDSHERTLYRGKLEIKQVADRLAIRPREDVVDAAHRLYKLAV 120
Query: 506 DGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
+GR +A ACLYI CRQE P + V + + +G F + + L
Sbjct: 121 QRNFTRGRRVSQVAGACLYIICRQESRPYMLIDFADVLQTNVYVLGAVFLQLCRLL 176
>UniRef50_Q9VEL2 Cluster: CG31256-PA; n=7; Endopterygota|Rep:
CG31256-PA - Drosophila melanogaster (Fruit fly)
Length = 662
Score = 59.7 bits (138), Expect = 1e-07
Identities = 53/210 (25%), Positives = 90/210 (42%)
Frame = +2
Query: 140 EDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTII 319
ED GD +C CG V+ D +I ++ E+ G + +G + SGG +
Sbjct: 17 EDNARGDRVCMNCGSVLEDSLIVSEVQF-----EEVGHGAAAIGQFVSAESSGGATN--- 68
Query: 320 GPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQ 499
+G K+Q S + + A ++I + ++ L + D A N FK
Sbjct: 69 -----------YGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKM 117
Query: 500 VHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 679
+GR + I +AC+Y+ CR EG +I V +I E+GR + + AL
Sbjct: 118 ALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCI 177
Query: 680 SV*SHYNSRFYVSGFARIWVCQIQCNAQLH 769
++ S + Y+ FA ++Q A+ H
Sbjct: 178 NIPS-LDPCLYIMRFAN----RLQLGAKTH 202
>UniRef50_Q9Y942 Cluster: Transcription initiation factor IIB; n=1;
Aeropyrum pernix|Rep: Transcription initiation factor
IIB - Aeropyrum pernix
Length = 322
Score = 59.7 bits (138), Expect = 1e-07
Identities = 42/195 (21%), Positives = 95/195 (48%), Gaps = 11/195 (5%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP--ENPLLSGGDL 307
++ D G IC++ G ++G+ +I S+ + ++ E+ + GGP + G +
Sbjct: 24 IVTDPVRGLKICADTGEIIGEDIIGTESDVKAYTPEERQ-QKTHYGGPLKYSHHYMGVEA 82
Query: 308 STIIGPGRGDASFDSFGVSKYQ----NRRNISSTDRALINAFREINTMADRINLPKTIVD 475
S G + + + R ++S D+ L A IN +A R+ +P+ +V+
Sbjct: 83 SLEHPRDHGPKGIKQRKILPRRPPRLSARPLTSVDKNLQTALSLINEVASRMGMPEIVVE 142
Query: 476 RANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-----ISKKEI 640
A+ ++++ + +GR+ ++I +A LY A R G+P + +I K +++++
Sbjct: 143 DASKIYREAMEKGLTRGRSIESIVAASLYAASRIHGLPHSLTDIIKAMKGNVDAETRRDV 202
Query: 641 GRCFKLILKALETSV 685
R ++L+++ L +
Sbjct: 203 ARSYRLLVRDLNIKI 217
Score = 33.1 bits (72), Expect = 9.5
Identities = 20/82 (24%), Positives = 38/82 (46%)
Frame = +2
Query: 428 INTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEI 607
+ T+ + LP+ + A + G+ +A A +Y+A + G+ +T KEI
Sbjct: 226 VYTIISALGLPEHVAIEAIKIIDLSRKKGLTAGKDPGGLAGAAVYLAALKHGIRKTQKEI 285
Query: 608 CAVSKISKKEIGRCFKLILKAL 673
V +++ I +K I +AL
Sbjct: 286 AHVVGVTEVTIRNRYKEIAQAL 307
>UniRef50_Q93WQ2 Cluster: TFIIB-related protein; n=9;
Magnoliophyta|Rep: TFIIB-related protein - Zea mays
(Maize)
Length = 469
Score = 58.8 bits (136), Expect = 2e-07
Identities = 33/98 (33%), Positives = 55/98 (56%)
Frame = +2
Query: 410 INAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVP 589
+ A+ +I +A + L + I D A LFK L+ R+ +A+A+A L A R+ P
Sbjct: 84 LRAYLQIVDVASILRLDRDIADHAFELFKDCSSATCLRNRSVEALATAALVQAIREAQQP 143
Query: 590 RTFKEICAVSKISKKEIGRCFKLILKALETSV*SHYNS 703
RT +EI S + +KEIG+ K++ ++L+ S + NS
Sbjct: 144 RTLQEISTASNLPQKEIGKYIKILGESLKLSQPLNSNS 181
>UniRef50_Q1JSU6 Cluster: Transcription factor IIIb subunit,
putative; n=1; Toxoplasma gondii|Rep: Transcription
factor IIIb subunit, putative - Toxoplasma gondii
Length = 644
Score = 58.8 bits (136), Expect = 2e-07
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Frame = +2
Query: 392 STDRALINAFREINTMADRINLP-KTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIA 568
S ++ L F I ++A+R+ L + + A+ L+ GR + +ASACLY
Sbjct: 62 SREQTLQRGFNNIQSIAERLRLSSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAI 121
Query: 569 CRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV*SHYNSRFYVSGFARIWVCQI 748
CR+E P + C V + + + +G+ F +L+ L V H + ++ FA CQ+
Sbjct: 122 CRRERTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQV-PHVDPSLFLERFA----CQM 176
Query: 749 QCNAQLH 769
Q + H
Sbjct: 177 QLGDKTH 183
>UniRef50_Q92994 Cluster: Transcription factor IIIB 90 kDa subunit;
n=43; Euteleostomi|Rep: Transcription factor IIIB 90 kDa
subunit - Homo sapiens (Human)
Length = 677
Score = 57.6 bits (133), Expect = 4e-07
Identities = 49/177 (27%), Positives = 81/177 (45%)
Frame = +2
Query: 143 DYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG 322
D GD +C+ CG V+ D +I SE + E SG S VG + L G + +G
Sbjct: 17 DAARGDAVCTACGSVLEDNIIV--SEVQFV--ESSGGGSSAVG--QFVSLDGAGKTPTLG 70
Query: 323 PGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQV 502
G F V+ + R + L N R I+ + +++ L + +D A N FK
Sbjct: 71 GG--------FHVNLGKESRA-----QTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMA 117
Query: 503 HDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
+GR + +ACLY+ CR EG P ++ + +++ +G+ F L+ + L
Sbjct: 118 VSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAREL 174
>UniRef50_O23215 Cluster: Transcription initiation factor like
protein; n=1; Arabidopsis thaliana|Rep: Transcription
initiation factor like protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 503
Score = 57.2 bits (132), Expect = 5e-07
Identities = 32/98 (32%), Positives = 55/98 (56%)
Frame = +2
Query: 410 INAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVP 589
+ A+ +I +A + L I + A LF+ L+ R+ +A+A+ACL A R+ P
Sbjct: 131 LRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATACLVQAIREAQEP 190
Query: 590 RTFKEICAVSKISKKEIGRCFKLILKALETSV*SHYNS 703
RT +EI + + +KEIG+ K++ +AL+ S + NS
Sbjct: 191 RTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNS 228
Score = 33.9 bits (74), Expect = 5.5
Identities = 14/53 (26%), Positives = 34/53 (64%)
Frame = +2
Query: 539 AIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV*SHY 697
+I++A +Y+AC+ E +T EIC ++ +++ + + +K +L+ + + S+Y
Sbjct: 270 SISAAAIYLACQLEDKRKTQAEICKITGLTEVTLRKVYKELLENWDDLLPSNY 322
>UniRef50_A2D806 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 314
Score = 55.2 bits (127), Expect = 2e-06
Identities = 41/153 (26%), Positives = 71/153 (46%)
Frame = +2
Query: 113 YAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLL 292
+ H + ++ D + G ++C++CG+ + D SE+R F+ E D SR G +
Sbjct: 14 HCHTFSMIVND-KTGLLVCNKCGVCADTPLYDETSEYRNFAIEHGVKDKSRTGYSGDA-- 70
Query: 293 SGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIV 472
+ DL T I + S +S +S + S L A R I+ + + +NL K I
Sbjct: 71 NAADLGTAI---QLTGSKNSKLLSDLNKKIVQDSKLIKLKKAMRRISQLVEDMNLGKPIA 127
Query: 473 DRANNLFKQVHDGKNLKGRANDAIASACLYIAC 571
+A ++K D L + A+ + C+Y AC
Sbjct: 128 SKAQEIYKNALDNGLLHNQKLVAVDAVCVYYAC 160
>UniRef50_A1RX53 Cluster: Zinc finger, TFIIB-type domain protein;
n=1; Thermofilum pendens Hrk 5|Rep: Zinc finger,
TFIIB-type domain protein - Thermofilum pendens (strain
Hrk 5)
Length = 279
Score = 54.4 bits (125), Expect = 4e-06
Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +2
Query: 398 DRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIAC-R 574
+R + RE+ +MA +NLP +++ F +V L+GR A+A+A +Y C +
Sbjct: 82 ERKSASYLREVESMAKSMNLPPHLIEEVKEYFTKVQKEGLLRGRNRKAVAAAIIYYVCSK 141
Query: 575 QEGVPRTFKEICAVSKISKKEIGRCFKLILK 667
++ V + K++ V+ +S+ ++ + ++++LK
Sbjct: 142 EKNVSVSLKDLEGVAGVSENDVKKAYRVLLK 172
>UniRef50_A5DLD8 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 539
Score = 54.0 bits (124), Expect = 5e-06
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Frame = +2
Query: 278 ENPLLSG---GDLSTIIGPGRGDASFDSFGVSKYQNRRN-ISSTDRALINAFREINTMAD 445
ENP++S G+LS+ +G + + R+N + S ++ L N ++I +A
Sbjct: 37 ENPIVSEVQFGELSSGAAVVQGTMVGADQTRATFGGRQNAMESREQTLQNGRKKIKRIAT 96
Query: 446 RINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKI 625
+ +P I D A F+ ++GR + + +ACLY+ACR+E P + + +I
Sbjct: 97 AMRIPDYISDAAAEWFRLALTLNFVQGRRSQNVLAACLYVACRKEKTPHMLIDFSSRLQI 156
Query: 626 SKKEIGRCFKLILKAL 673
S +G F +++AL
Sbjct: 157 SVYSLGATFLKMVRAL 172
>UniRef50_A6R8J6 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 818
Score = 52.8 bits (121), Expect = 1e-05
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 1/185 (0%)
Frame = +2
Query: 122 PDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGG 301
P ++ED G +CS CG VV + ++ SE TF SG ++ G
Sbjct: 60 PAPNIVED--DGMKVCSGCGTVVSEA--NIVSEI-TFGESASGA----------AVVQG- 103
Query: 302 DLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRA 481
T +G G+ SFG +Q + S + N R I ++ +N+P++ A
Sbjct: 104 ---TFVGAGQSYGR--SFGPG-FQRGGGMESREITEQNGNRYIAQLSRALNVPESATKAA 157
Query: 482 NNLFKQVHDGKNLKGRANDAIASACLYIAC-RQEGVPRTFKEICAVSKISKKEIGRCFKL 658
+FK ++GR +A+ CLYIAC RQ+G + V I+ ++GR +K
Sbjct: 158 GQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRAYKA 217
Query: 659 ILKAL 673
+L L
Sbjct: 218 LLDEL 222
>UniRef50_A1D6E9 Cluster: Transcription factor TFIIIB complex
subunit Brf1, putative; n=4; Trichocomaceae|Rep:
Transcription factor TFIIIB complex subunit Brf1,
putative - Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / NRRL 181)(Aspergillus fischerianus (strain ATCC
1020 / DSM 3700 / NRRL 181))
Length = 752
Score = 52.4 bits (120), Expect = 1e-05
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 1/185 (0%)
Frame = +2
Query: 122 PDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGG 301
P ++ED G +CS CG V+ + ++ SE TF SG ++ G
Sbjct: 66 PAPHIVED--DGQKVCSGCGTVISEA--NIVSEV-TFGETSSGA----------AVVQG- 109
Query: 302 DLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRA 481
T +G + S+G +Q + S + N R IN ++ +N+P++ + A
Sbjct: 110 ---TFVGEDQTHVR--SYGPG-FQRGGAMESREITEQNGTRYINQLSRALNIPESAMKAA 163
Query: 482 NNLFKQVHDGKNLKGRANDAIASACLYIAC-RQEGVPRTFKEICAVSKISKKEIGRCFKL 658
+FK ++GR +A+ CLYIAC RQ+G + V ++ ++GR +K
Sbjct: 164 GQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMVNVFKLGRTYKA 223
Query: 659 ILKAL 673
+L L
Sbjct: 224 LLDEL 228
>UniRef50_P46070 Cluster: Transcription factor IIIB 70 kDa subunit;
n=1; Kluyveromyces lactis|Rep: Transcription factor IIIB
70 kDa subunit - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 556
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/103 (25%), Positives = 52/103 (50%)
Frame = +2
Query: 368 YQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIA 547
+ + + S + L NA R++ ++ +N+P+ + D A ++ ++GR + +
Sbjct: 78 HSGQNALMSRETTLNNARRKLKAVSYALNIPEYVTDAAFQWYRLALSNNFVQGRKSQNVI 137
Query: 548 SACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALE 676
+ACLYIACR+E + + ++S IG F + K L+
Sbjct: 138 AACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLAKKLQ 180
Score = 37.9 bits (84), Expect = 0.33
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 521 KGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 640
+GR IA ACL +ACR + RT EI A+S ++++ +
Sbjct: 227 EGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVAEETL 266
>UniRef50_Q3LWB8 Cluster: Transcription initiation factor IIB; n=1;
Bigelowiella natans|Rep: Transcription initiation factor
IIB - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 193
Score = 52.0 bits (119), Expect = 2e-05
Identities = 41/183 (22%), Positives = 87/183 (47%), Gaps = 1/183 (0%)
Frame = +2
Query: 110 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 289
C + + L ++ G++ C CG ++ + G+++ ++S + R G
Sbjct: 18 CNKYKEENLTKNILTGEINCKSCGYIITSNPYNDGADFLSYS-QLEHTSGDRFGKELIDD 76
Query: 290 LSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTI 469
+ DL T +G G+ + +F +S N++ T R+I + D ++LP+ I
Sbjct: 77 NANKDLFTTVGKGK-NVAFKFHVLSS----TNVNKT------MIRKIENICDTLHLPRII 125
Query: 470 VDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGR 646
D + NLF + G+++K + + A + ++ + R++G+ F ++K I KK+I +
Sbjct: 126 TDESINLF--IKYGRSIKSKKSYTKACSFIFFSSRKQGLSPQFDTFMKINKSIKKKDIYK 183
Query: 647 CFK 655
K
Sbjct: 184 YVK 186
>UniRef50_Q17IB0 Cluster: Transcription factor IIIB 90 kDa subunit;
n=4; Endopterygota|Rep: Transcription factor IIIB 90 kDa
subunit - Aedes aegypti (Yellowfever mosquito)
Length = 644
Score = 52.0 bits (119), Expect = 2e-05
Identities = 49/177 (27%), Positives = 77/177 (43%)
Frame = +2
Query: 143 DYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG 322
D GD +C+ CG V+ D +I SE + F G S VG +
Sbjct: 17 DNARGDAVCTNCGSVLEDNIIV--SEVQ-FEENAHGAS-SAVG------------QFVAS 60
Query: 323 PGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQV 502
+G A+ ++G K+ S + L A + I + +++L ++ A N FK
Sbjct: 61 DSKGGAT--AYG--KFHVGTGTESREVTLRKARQGITHLCHQLHLNNHCIETACNFFKMA 116
Query: 503 HDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
+GR N I +AC+YI CR EG +I V +I E+GR + + +AL
Sbjct: 117 LIRHLTRGRRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRTYLKLSQAL 173
>UniRef50_Q5CRA9 Cluster: Cyclin domain protein; n=2;
Cryptosporidium|Rep: Cyclin domain protein -
Cryptosporidium parvum Iowa II
Length = 648
Score = 51.6 bits (118), Expect = 3e-05
Identities = 28/101 (27%), Positives = 46/101 (45%)
Frame = +2
Query: 383 NISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLY 562
N S + L + + +AD++ L + ++ A +F GR N +ASACLY
Sbjct: 74 NRESREHVLQRGYHNLQRIADQLRLSSSHIESAQRVFLMAVQRSFTIGRNNMHVASACLY 133
Query: 563 IACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 685
CR+E P + V + K +G+ F +L+ L V
Sbjct: 134 AICRREKTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLHV 174
>UniRef50_Q8ZTC0 Cluster: Transcription initiation factor IIB; n=4;
Pyrobaculum|Rep: Transcription initiation factor IIB -
Pyrobaculum aerophilum
Length = 298
Score = 51.6 bits (118), Expect = 3e-05
Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
+I DY G +IC CG+V+ D + D+G EWR + ++ P +G S GD+
Sbjct: 23 VIVDYERGQVICKSCGVVLKDGIADLGPEWRKPESSRAYSGP--IGS------SIGDIE- 73
Query: 314 IIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFRE-INTMADRINLPKTIVDRANNL 490
G + + + K+ R IS+ + + RE + + +++++PK +++ L
Sbjct: 74 -FGNVKVADKLKAISLKKFS--RPISTPLERVESDVREFLESAKEKLSIPKNVIEETVML 130
Query: 491 FKQVHDGKNLKGRANDAIASACLYIACRQEGVPR-TFKEI 607
+K+++D K ++ A A LY ++ G+ T K+I
Sbjct: 131 YKKLYDA-GYKAPRLESYA-AVLYFVLKKHGIAAVTLKKI 168
>UniRef50_Q4T2A5 Cluster: Chromosome undetermined SCAF10300, whole
genome shotgun sequence; n=3; Eumetazoa|Rep: Chromosome
undetermined SCAF10300, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 165
Score = 51.2 bits (117), Expect = 3e-05
Identities = 43/162 (26%), Positives = 69/162 (42%)
Frame = +2
Query: 107 VCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENP 286
VC + + D G +C++CG V+ D +I +E V+ S GG +
Sbjct: 5 VCGTCGGSDIDVDQARGSAVCTDCGSVLEDNII---------VSEVQFVEGS--GGVSSA 53
Query: 287 LLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKT 466
+ G + GP + F S + R + L R+I + ++ L +
Sbjct: 54 V---GQFVSADGPVKAPLLGSGFHTSVGKESRA-----QTLQGGKRQIQHLGSQLQLNQH 105
Query: 467 IVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPR 592
+D A N FK V +GR + + +ACLY+ CR EG PR
Sbjct: 106 CLDTAFNFFKMVVSKHLTRGRKTEHVIAACLYLVCRTEGTPR 147
>UniRef50_A1CL18 Cluster: Transcription factor TFIIIB complex
subunit Brf1, putative; n=5; cellular organisms|Rep:
Transcription factor TFIIIB complex subunit Brf1,
putative - Aspergillus clavatus
Length = 755
Score = 51.2 bits (117), Expect = 3e-05
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 1/185 (0%)
Frame = +2
Query: 122 PDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGG 301
P ++ED G +CS CG V+ + ++ SE TF SG ++ G
Sbjct: 66 PAPHIVED--DGHKVCSGCGTVISEA--NIVSEV-TFGETSSGA----------AVVQGA 110
Query: 302 DLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRA 481
+ G S+G +Q + S + N R IN ++ +N+P++ + A
Sbjct: 111 FV------GEDQTHVRSYGPG-FQRGGAMESREITEQNGNRYINQLSRALNIPESAMKAA 163
Query: 482 NNLFKQVHDGKNLKGRANDAIASACLYIAC-RQEGVPRTFKEICAVSKISKKEIGRCFKL 658
+FK ++GR +A+ CLYIAC RQ+G + V ++ ++GR +K
Sbjct: 164 GQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMVNVFKLGRTYKA 223
Query: 659 ILKAL 673
+L L
Sbjct: 224 LLDEL 228
>UniRef50_Q4S6G3 Cluster: Chromosome 10 SCAF14728, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 10
SCAF14728, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 161
Score = 50.8 bits (116), Expect = 4e-05
Identities = 41/150 (27%), Positives = 64/150 (42%)
Frame = +2
Query: 143 DYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG 322
D GD +C+ CG V+ D VI E+ ++G S G +GG + +
Sbjct: 17 DQARGDAVCTGCGSVLEDNVIVSEVEF-----VETGGGASHAVGRFVSSEAGGAVMSF-- 69
Query: 323 PGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQV 502
GD+ + G S + L A INT+ ++ + K +D A N +K
Sbjct: 70 ---GDSHLGNIGAE---------SRAQTLARARNSINTLGVQLQMNKHCLDTAFNFYKMA 117
Query: 503 HDGKNLKGRANDAIASACLYIACRQEGVPR 592
+GR + +AC+Y+ CR EG PR
Sbjct: 118 LTKHLTRGRKASHVIAACIYMVCRTEGTPR 147
>UniRef50_Q92994-4 Cluster: Isoform 4 of Q92994 ; n=2; Homo
sapiens|Rep: Isoform 4 of Q92994 - Homo sapiens (Human)
Length = 242
Score = 50.4 bits (115), Expect = 6e-05
Identities = 45/155 (29%), Positives = 69/155 (44%)
Frame = +2
Query: 143 DYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG 322
D GD +C+ CG V+ D +I SE + E SG S VG + L G + +G
Sbjct: 17 DAARGDAVCTACGSVLEDNIIV--SEVQFV--ESSGGGSSAVG--QFVSLDGAGKTPTLG 70
Query: 323 PGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQV 502
G F V+ + R + L N R I+ + +++ L + +D A N FK
Sbjct: 71 GG--------FHVNLGKESRA-----QTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMA 117
Query: 503 HDGKNLKGRANDAIASACLYIACRQEGVPRTFKEI 607
+GR + +ACLY+ CR EG P ++
Sbjct: 118 VSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDL 152
>UniRef50_Q1PEE4 Cluster: Transcription factor IIB family protein;
n=3; Arabidopsis thaliana|Rep: Transcription factor IIB
family protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 362
Score = 50.4 bits (115), Expect = 6e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 428 INTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEI 607
I +++ + LP TI +AN +FK V +G+ + + +AC+YIACR + RT +EI
Sbjct: 164 IEAISNGLKLPATIKGQANEIFKVVES--YARGKERNVLFAACIYIACRDNDMTRTMREI 221
Query: 608 CA-VSKISKKEIGRCFKLILKALE 676
+K S +I I + LE
Sbjct: 222 SRFANKASISDISETVGFIAEKLE 245
>UniRef50_P29056 Cluster: Transcription factor IIIB 70 kDa subunit;
n=5; Saccharomycetales|Rep: Transcription factor IIIB 70
kDa subunit - Saccharomyces cerevisiae (Baker's yeast)
Length = 596
Score = 50.4 bits (115), Expect = 6e-05
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Frame = +2
Query: 278 ENPLLSGGDLS-TIIGPGRGDASFDSFGVSK--YQNRRNISSTDRALINAFREINTMADR 448
+NP++S T G SF G S + + S + L NA R++ ++
Sbjct: 34 DNPIVSEVTFGETSAGAAVVQGSFIGAGQSHAAFGGSSALESREATLNNARRKLRAVSYA 93
Query: 449 INLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKIS 628
+++P+ I D A +K ++GR + + ++CLY+ACR+E + + ++S
Sbjct: 94 LHIPEYITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVS 153
Query: 629 KKEIGRCFKLILKALETSV*SHYNSRFYVSGFA 727
IG F ++K L + + ++ FA
Sbjct: 154 VYSIGATFLKMVKKLHITELPLADPSLFIQHFA 186
Score = 39.5 bits (88), Expect = 0.11
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +2
Query: 329 RGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKT---IVDRANNLFKQ 499
R S S G + + + + T+ L + I A++++L +V A L ++
Sbjct: 149 RLQVSVYSIGATFLKMVKKLHITELPLADPSLFIQHFAEKLDLADKKIKVVKDAVKLAQR 208
Query: 500 VHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 640
+ +GR IA AC+ +ACR + RT EI AVS ++++ +
Sbjct: 209 MSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETL 255
>UniRef50_A3H9T5 Cluster: Zinc finger, TFIIB-type; n=1; Caldivirga
maquilingensis IC-167|Rep: Zinc finger, TFIIB-type -
Caldivirga maquilingensis IC-167
Length = 286
Score = 49.6 bits (113), Expect = 1e-04
Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 1/220 (0%)
Frame = +2
Query: 110 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 289
C A + I D +G + C++CG V+ + ID G EWR +K+G SR P +
Sbjct: 4 CPACGSSEFIYDEYSGTVYCAKCGYVLSEHEIDKGPEWR--GVDKNGKSLSR-ASPVSAS 60
Query: 290 LSGGDL-STIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKT 466
G ++ I+ R F + + N S + ++ + + + LP++
Sbjct: 61 SPGFNMYVNIVSVNR-----PKFRIIPSLSLFNSSERNVMMLRSIAK--QVIANAGLPES 113
Query: 467 IVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR 646
I+D ++ + N +G+ + A A +YIACR+ +P T K++ S + K +
Sbjct: 114 ILDEVVLNYRLLMK-MNYRGKIKET-AVALVYIACRRRNLPCTMKDLLRNSDVDIKGFNK 171
Query: 647 CFKLILKALETSV*SHYNSRFYVSGFARIWVCQIQCNAQL 766
+ I + ++ YN ++ RI V I N+ +
Sbjct: 172 AYMHIANLM--NIKGIYNDEQLINMTLRI-VNMININSNI 208
>UniRef50_Q9P6R0 Cluster: Transcription factor IIIB 60 kDa subunit;
n=1; Schizosaccharomyces pombe|Rep: Transcription factor
IIIB 60 kDa subunit - Schizosaccharomyces pombe (Fission
yeast)
Length = 500
Score = 49.6 bits (113), Expect = 1e-04
Identities = 29/128 (22%), Positives = 61/128 (47%)
Frame = +2
Query: 350 SFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGR 529
+FG Y+N+ ++ S + + N R I+ +A + L + ++ A F + +KGR
Sbjct: 72 TFG-GPYRNQGSVESRELTIANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIKGR 130
Query: 530 ANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV*SHYNSRF 709
+ + ++CLYI CR + + +I+ ++G F + + L ++ +
Sbjct: 131 RSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVLRPNL-PLLDPSL 189
Query: 710 YVSGFARI 733
Y+S FA +
Sbjct: 190 YISRFASL 197
>UniRef50_P43072 Cluster: Transcription factor IIIB 70 kDa subunit;
n=5; Saccharomycetales|Rep: Transcription factor IIIB 70
kDa subunit - Candida albicans (Yeast)
Length = 553
Score = 49.6 bits (113), Expect = 1e-04
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Frame = +2
Query: 377 RRN-ISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASA 553
R+N + S ++ L N R+I +A + +P I + A F+ ++GR ++ + +
Sbjct: 77 RQNAMESREQTLSNGKRKIKRIAAALKIPDYIAEAAGEWFRLALTLNFVQGRRSNNVLAT 136
Query: 554 CLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
CLY+ACR+E + + +IS +G F ++KAL
Sbjct: 137 CLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKMVKAL 176
>UniRef50_A5K3R6 Cluster: Transcription factor IIIb subunit,
putative; n=1; Plasmodium vivax|Rep: Transcription
factor IIIb subunit, putative - Plasmodium vivax
Length = 826
Score = 48.8 bits (111), Expect = 2e-04
Identities = 29/112 (25%), Positives = 52/112 (46%)
Frame = +2
Query: 392 STDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIAC 571
S + +L + I +AD ++L V+ A ++ GR N +A++CLY C
Sbjct: 77 SRELSLQKGYINIQKIADHLHLSTQHVEAAQRIYLMALQRNFTMGRNNSYVAASCLYTIC 136
Query: 572 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV*SHYNSRFYVSGFA 727
R+E P + + + K +G+ F +L+ L SV + + Y+ FA
Sbjct: 137 RREKSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHISV-PNIDPSLYLERFA 187
>UniRef50_Q54U85 Cluster: Transcription factor IIIB; n=1;
Dictyostelium discoideum AX4|Rep: Transcription factor
IIIB - Dictyostelium discoideum AX4
Length = 706
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/122 (22%), Positives = 57/122 (46%)
Frame = +2
Query: 362 SKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDA 541
S Y++ S ++ NA ++++ + + + + ++D A F+ + KGR
Sbjct: 59 SSYRSLGGRDSRAMSVENARKKLDQIGNSLRIRSHLIDSAQRTFELAMENNFTKGRQTRL 118
Query: 542 IASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV*SHYNSRFYVSG 721
+A+ACLYI CR+E P + +++ + F ++K L + + F++
Sbjct: 119 VAAACLYIVCRRERTPHLLIDFSENLQVNVFIVAGTFLQLIKLLNIQL-PIVDPSFFIQR 177
Query: 722 FA 727
FA
Sbjct: 178 FA 179
Score = 33.9 bits (74), Expect = 5.5
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 461 KTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 640
K ++ AN L ++ GR I A LYIA + G R+ KEI V KI ++ +
Sbjct: 189 KDVIATANKLVARMKRDWMSIGRKPSGICGASLYIASKIHGFKRSMKEIVHVVKIGEQTL 248
>UniRef50_Q4PHC2 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 765
Score = 48.0 bits (109), Expect = 3e-04
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 11/208 (5%)
Frame = +2
Query: 143 DYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG 322
DY +CS+CG+V+ + I + S + V S + G + + + G
Sbjct: 12 DYADNQAVCSQCGVVLEESQIVSDITFGENSAGGAVVQGSMIAGDQAR-------ARVSG 64
Query: 323 PGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQV 502
PG F VS+ S D + NA IN MA + +P + DRA F
Sbjct: 65 PG----GFRGGYVSE--------SRDMTISNARTGINNMASALRIPSHVADRALRFFTLA 112
Query: 503 HDG----------KN-LKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRC 649
DG KN + GR ++ ++CLY+ACR E + +++ +GR
Sbjct: 113 LDGGASAATGEEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRS 172
Query: 650 FKLILKALETSV*SHYNSRFYVSGFARI 733
+ +++ L + + Y++ FA +
Sbjct: 173 YLKLIRVLNLRL-PLIDPSIYIARFAAL 199
>UniRef50_Q7R8B0 Cluster: Transcription factor iiib 70 kDa subunit;
n=2; Plasmodium yoelii yoelii|Rep: Transcription factor
iiib 70 kDa subunit - Plasmodium yoelii yoelii
Length = 756
Score = 47.2 bits (107), Expect = 5e-04
Identities = 25/98 (25%), Positives = 46/98 (46%)
Frame = +2
Query: 392 STDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIAC 571
S + +L + I +AD ++L ++ A ++ GR N +A++CLY C
Sbjct: 73 SREISLQKGYINIQKIADNLHLSNQHIEAAQRIYLMALQRNFTMGRNNSYVAASCLYTIC 132
Query: 572 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV 685
R+E P + + + K +G+ F +L+ L SV
Sbjct: 133 RREKSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHISV 170
>UniRef50_A7T629 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 522
Score = 47.2 bits (107), Expect = 5e-04
Identities = 41/177 (23%), Positives = 71/177 (40%)
Frame = +2
Query: 143 DYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG 322
D GD +C CG V+ D +I SE + N G S +G +
Sbjct: 16 DPSRGDAVCMGCGSVLEDNIIV--SEVQFQENSLGGT--SAIG------------QFVSS 59
Query: 323 PGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQV 502
G+ S G Y + + S L + IN + ++ + + +D A N +K
Sbjct: 60 EGKEQFGTPSRGGGTYVHLNHFWS----LFKGRKRINQLGHQLQMNQHCIDTAYNFYKLA 115
Query: 503 HDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
+ + +GR + +ACLY+ CR E P + + +I +GR + + + L
Sbjct: 116 VNKRLTRGRRTAHVVAACLYLVCRTERTPHMLLDFSDILQIDVFTLGRAYLKLAQEL 172
>UniRef50_Q8IKY2 Cluster: Transcription factor IIIb subunit,
putative; n=3; Plasmodium|Rep: Transcription factor IIIb
subunit, putative - Plasmodium falciparum (isolate 3D7)
Length = 748
Score = 46.8 bits (106), Expect = 7e-04
Identities = 49/201 (24%), Positives = 86/201 (42%)
Frame = +2
Query: 83 SRIEANKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPS 262
+ I N+VVC + + + G++IC CG V+ + I E+ N + S
Sbjct: 9 NNITLNQVVCKNCLSSDVETNEGQGEVICLRCGSVLEENKIVESLEF--VENNNGAI--S 64
Query: 263 RVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMA 442
VG + S G+ S I+ S+G+ + R IS L + I +A
Sbjct: 65 MVG---QFIPSSGNKSFIL----------SWGI---RESREIS-----LQKGYVNIQKIA 103
Query: 443 DRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK 622
D ++L ++ A ++ GR N +A++CLY CR+E P + + +
Sbjct: 104 DHLHLSSQHIEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRREKSPIMLIDFSDILQ 163
Query: 623 ISKKEIGRCFKLILKALETSV 685
K +G+ F +L+ L +V
Sbjct: 164 TPVKPLGKTFLKLLRLLHINV 184
>UniRef50_A4RG97 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 701
Score = 46.4 bits (105), Expect = 0.001
Identities = 42/141 (29%), Positives = 63/141 (44%)
Frame = +2
Query: 158 DMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGRGD 337
D C CG V D I ++ + + V S VG LSGG GR
Sbjct: 72 DGTCRTCGRVADDSNIVAEIQFGETAGGAAVVQGSYVGPDGGVRLSGGQ------GGRRI 125
Query: 338 ASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKN 517
A ++ ++ + R R+LI F A+ +NLP+ V+ A+ LFK
Sbjct: 126 AGTNTSSEAREKALREA----RSLIQGF------ANSLNLPERTVNGASQLFKLASSRNF 175
Query: 518 LKGRANDAIASACLYIACRQE 580
+GR++ +A+ CLY ACR+E
Sbjct: 176 TQGRSSVYVAAMCLYAACRKE 196
>UniRef50_A6RWP2 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 726
Score = 45.6 bits (103), Expect = 0.002
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 1/173 (0%)
Frame = +2
Query: 158 DMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGRGD 337
D +C CG VV D I ++ S+ + V S VG + GG + +GP
Sbjct: 56 DGVCHNCGTVVDDSNIVSEIQFGESSSGAAIVQGSHVGADQ-----GG--AQTMGP---- 104
Query: 338 ASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKN 517
+F G + S+ + L R + +A+++ + ++ + +FK
Sbjct: 105 -AFRRAGGGE-------SNKENTLREGKRIMQALANQLGISDQVIGVGHQIFKLASMNNF 156
Query: 518 LKGRANDAIASACLYIACRQEGVPRTFK-EICAVSKISKKEIGRCFKLILKAL 673
++GR D +A+ CLY ACR+E R + S+++ +G+ FK + K +
Sbjct: 157 IQGRRTDLVAAVCLYSACRKEQPCRVMLIDFADKSQVNVFTLGKYFKALHKQI 209
>UniRef50_Q6C4S8 Cluster: Similar to sp|P29056 Saccharomyces
cerevisiae YGR246c BRF1 TFIIIB subunit; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P29056 Saccharomyces
cerevisiae YGR246c BRF1 TFIIIB subunit - Yarrowia
lipolytica (Candida lipolytica)
Length = 512
Score = 45.2 bits (102), Expect = 0.002
Identities = 28/112 (25%), Positives = 50/112 (44%)
Frame = +2
Query: 392 STDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIAC 571
S + L I +A +++P+ I+++A+ F +KGR + + SACLY+AC
Sbjct: 69 SRELTLQKGKNRITALAHAMDIPQHIIEKAHRYFVLAVTKNFVKGRRSQYVVSACLYVAC 128
Query: 572 RQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV*SHYNSRFYVSGFA 727
R+E + + IG + +LK L+ + Y+ FA
Sbjct: 129 RRELRHEMLIDFADKLFCNVFAIGTTYLQLLKTLDIKNLPLIDPSIYIQRFA 180
>UniRef50_Q7QYC8 Cluster: GLP_387_786_2216; n=2; Giardia
intestinalis|Rep: GLP_387_786_2216 - Giardia lamblia
ATCC 50803
Length = 476
Score = 44.8 bits (101), Expect = 0.003
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +2
Query: 383 NISSTDRAL-INAF-REINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASAC 556
N SST R+L I F +E+ T+A +NLP +V +A++ + K +GR N+ +A+A
Sbjct: 59 NTSSTARSLAIKHFSKELETIAMILNLPMELVRKASDYYANCLRDKATRGRRNNLLAAAL 118
Query: 557 LYIACRQEGV 586
LYI RQ +
Sbjct: 119 LYIVGRQHNL 128
>UniRef50_Q016X1 Cluster: Transcription factor IIIB; n=2;
Ostreococcus|Rep: Transcription factor IIIB -
Ostreococcus tauri
Length = 601
Score = 44.4 bits (100), Expect = 0.004
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 3/169 (1%)
Frame = +2
Query: 155 GDMICSECGLVVGDRVIDVGSEWRTFSNEKSGV---DPSRVGGPENPLLSGGDLSTIIGP 325
G IC CG V V+ W T G D + VG L+ + P
Sbjct: 32 GSEICQSCGAVYRASVLQTTLNW-TEDGAADGTFLQDGAHVGAH----LAAARAQMVSMP 86
Query: 326 GRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVH 505
G + F R+ ST+ L + + + + L K I+ +L +
Sbjct: 87 GASHVTRHMF--------RDRESTN--LYHIAKSVEHTGALLKLNKDIIAEVKDLVTRAS 136
Query: 506 DGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 652
DGK +G + AC+Y CRQ +P + +E+ ++ +GR F
Sbjct: 137 DGKWGQGLWTSQLTGACVYSVCRQNNLPVSMREVAEACSVNVFTLGRVF 185
>UniRef50_Q4UC65 Cluster: Genomic DNA chromosome 3; n=3;
Piroplasmida|Rep: Genomic DNA chromosome 3 - Theileria
annulata
Length = 531
Score = 44.4 bits (100), Expect = 0.004
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 1/184 (0%)
Frame = +2
Query: 137 IEDY-RAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 313
IEDY G+++C +CG V+ + I E +S+ SG N + G +S
Sbjct: 14 IEDYTHLGELVCQDCGAVLQENTI---LEQVEYSDNNSG----------NTQVLGRFVSN 60
Query: 314 IIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLF 493
+ GR + ++ S ++ + I +A+ + L +D A ++
Sbjct: 61 L-SSGRQALTHTTW-----------HSREQVINRGNENIKKIAEALRLSPHHIDAAKRIY 108
Query: 494 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
GR N +AS CLY CR+E P + V K IG+ F +++ L
Sbjct: 109 LLAVQRNFTMGRNNLHVASCCLYTICRRERTPHLLIDFSDVLLTPVKTIGQIFMKLVRML 168
Query: 674 ETSV 685
SV
Sbjct: 169 HISV 172
>UniRef50_Q2H1N9 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 775
Score = 44.0 bits (99), Expect = 0.005
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +2
Query: 398 DRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQ 577
+R+L A + +N A ++ + + ++A ++K + ++GR + +A+ C+Y CR+
Sbjct: 135 ERSLREAKQLMNQFAHQLQIAPLVAEKAFQVYKFASNSNFIQGRRKNTVAAVCVYAVCRK 194
Query: 578 EGVPRTFK-EICAVSKISKKEIGRCFKLILKAL 673
E + ++ + K +GR +K +L AL
Sbjct: 195 EDNNKVMLIDLADIIKTDVFLLGRSYKDLLAAL 227
>UniRef50_Q4QA51 Cluster: Transcription factor, putative; n=3;
Leishmania|Rep: Transcription factor, putative -
Leishmania major
Length = 703
Score = 43.6 bits (98), Expect = 0.007
Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 2/191 (1%)
Frame = +2
Query: 119 HPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSG 298
HP + L D + G C+ CG VV + ++ +DP G P SG
Sbjct: 6 HPTSALFVDRQNGRTTCTICGDVV--------------TTDQYELDPIFAQGGRQPA-SG 50
Query: 299 GDLSTIIGPGRGDASFDSF--GVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIV 472
G L + G R S+ GV +R I R ++N R++ D V
Sbjct: 51 GGLRGLAGSFRPATSYKGTHTGVIHSHSRPTIDKARREMLNISRQLEISEDT-------V 103
Query: 473 DRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 652
+RA ++K + + G ++ ACLY ACR+E + ++ I
Sbjct: 104 ERALGIYKVALNLNAVSG-TRPSVLCACLYAACRRERTSHVIYDFSEINGEDPHTILSQM 162
Query: 653 KLILKALETSV 685
K I A T V
Sbjct: 163 KYICHATHTEV 173
Score = 33.5 bits (73), Expect = 7.2
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +2
Query: 395 TDRALINAFREINTMADRINL-PKT--IVDRANNLFKQVHDGKNLKGRANDAIASACLYI 565
T+ +I+ + A++++L P+T +V A + + + D GR + +A L +
Sbjct: 171 TEVPVIDPSCYVQRFAEQMDLGPQTTDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLV 230
Query: 566 ACRQEGVPRTFKEICAVSKISKKEIGR 646
AC G+ RT +++C + +++ IG+
Sbjct: 231 ACYVFGISRTPEQVCGMVRLTSNTIGK 257
>UniRef50_A7QRG5 Cluster: Chromosome chr8 scaffold_150, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr8 scaffold_150, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 422
Score = 41.9 bits (94), Expect = 0.021
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 389 SSTDRALINAFREINTMADRINLP--KTIVDRANNLFKQVHDGKNLKGRANDAIASACLY 562
+S +R L +A+ EI +A+ I + +I+ A + + +GR + +A+ACLY
Sbjct: 65 ASRERTLNDAYAEIGHIANAIGVSGGDSIIRPALAFYTIALERNFTRGRRKEQVAAACLY 124
Query: 563 IACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
IACR+ P + +I+ +G F + K L
Sbjct: 125 IACRENKKPFLLIDFSEHLRINVYVLGAVFLQLCKLL 161
>UniRef50_Q20429 Cluster: Brf (Transcription factor) homolog protein
1; n=2; Caenorhabditis|Rep: Brf (Transcription factor)
homolog protein 1 - Caenorhabditis elegans
Length = 759
Score = 41.5 bits (93), Expect = 0.027
Identities = 38/196 (19%), Positives = 81/196 (41%)
Frame = +2
Query: 140 EDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTII 319
ED GD C+ CG V+ + ++ ++++ R GG SG T++
Sbjct: 15 EDAARGDATCTACGTVLEESIVVTENQFQ-----------ERAGG------SG---HTLV 54
Query: 320 GPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQ 499
G S + + + + S + + I+ + ++ + ++ A N +K
Sbjct: 55 GQF---VSSERAAANNFNGMGSQESREMTYAKGRKVIDELGSQLRINSHCMNTAFNFYKM 111
Query: 500 VHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 679
+GR ++ + C+YI CR E + V++I+ ++GR + ++L
Sbjct: 112 CVSRNLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRNLNYLSRSLRI 171
Query: 680 SV*SHYNSRFYVSGFA 727
++ S + Y+ FA
Sbjct: 172 NLPS-TDPCLYIMRFA 186
>UniRef50_UPI0000498CFC Cluster: hypothetical protein 5.t00016; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 5.t00016 - Entamoeba histolytica HM-1:IMSS
Length = 284
Score = 39.5 bits (88), Expect = 0.11
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 6/175 (3%)
Frame = +2
Query: 101 KVVCYAHPDAP----LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 268
K++C H ++ +ED++ G C C V+ D+V+D G EWR+F +
Sbjct: 7 KILCEDHRNSGKQCVAVEDHKNGQYYCKYCQRVL-DKVLDEGQEWRSFDGNDERCRVTFS 65
Query: 269 GGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADR 448
G + D ST++ +G + S QN + +S R I+AF+ +
Sbjct: 66 GTLQ-------DTSTML---KGCTA--SSQQINAQNMK-VSGYRRDFIDAFK-------K 105
Query: 449 INLPKTIVDRANNLFKQV--HDGKNLKGRANDAIASACLYIACRQEGVPRTFKEI 607
+ L + V+ A + +++ KGR + + C++EG+ T ++I
Sbjct: 106 LQLDNSQVEHAMKVLQELMTEHANEFKGRMKKKNVEGIVLMVCQEEGIHMTLRDI 160
>UniRef50_UPI000023CB24 Cluster: hypothetical protein FG04004.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG04004.1 - Gibberella zeae PH-1
Length = 762
Score = 39.5 bits (88), Expect = 0.11
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +2
Query: 440 ADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFK-EICAV 616
A ++N+ ++V +FK ++GR ++A+ CLY ACR E + ++ +
Sbjct: 154 AQQLNVSDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVMLIDLADL 213
Query: 617 SKISKKEIGRCFK 655
+++ ++GR FK
Sbjct: 214 VQLNVFKLGRIFK 226
>UniRef50_Q5KFT1 Cluster: Transcription factor iiib 70 kd subunit,
putative; n=2; Filobasidiella neoformans|Rep:
Transcription factor iiib 70 kd subunit, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 691
Score = 39.5 bits (88), Expect = 0.11
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Frame = +2
Query: 122 PDAPLIEDYRAGDMICSECGLVVGDRVI--DVGSEWRTFSNEKSGVDPSRVGGPENPLLS 295
PD L D AG+++C CG +V + ++ +VG F+ G RV + +S
Sbjct: 11 PDGQLETDLSAGNIVCQRCGQIVEEGILVSEVG-----FAESAGG----RVH-VQGTFVS 60
Query: 296 GGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVD 475
+ +T + RG G QN NI + + I A ++ +++L I
Sbjct: 61 --NYATGVAGSRG-------GRGGQQNIENIKAQGASRIEA------LSRQMHLSSAITR 105
Query: 476 RANNLFKQVHDGKNLKGRANDAIASACLYIACR 574
A F D K +GR D I ++CLY+ CR
Sbjct: 106 GAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCR 138
>UniRef50_UPI00004997AD Cluster: transcription initiation factor
IIIB chain BRF; n=1; Entamoeba histolytica
HM-1:IMSS|Rep: transcription initiation factor IIIB
chain BRF - Entamoeba histolytica HM-1:IMSS
Length = 546
Score = 39.1 bits (87), Expect = 0.14
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Frame = +2
Query: 335 DASFDSFGVSKYQNRRNISSTDRA---LINAFREINTMADRINLPKTIVDRANNLFKQVH 505
+ FD G K T++ + R I + + + + ++ L++
Sbjct: 56 ELQFDESGGKKILAGTQFGETEKKRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAM 115
Query: 506 DGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCF 652
KGR A ACLYI CR+E + V +S + +GR F
Sbjct: 116 QTGITKGRKFSYSAGACLYIICRRERSDHLLIDFADVLHVSVRRLGRTF 164
>UniRef50_Q0DJB2 Cluster: Os05g0305100 protein; n=3; Oryza
sativa|Rep: Os05g0305100 protein - Oryza sativa subsp.
japonica (Rice)
Length = 574
Score = 37.9 bits (84), Expect = 0.33
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 383 NISSTDRALINAFREINTMADRINLP--KTIVDRANNLFKQVHDGKNLKGRANDAIASAC 556
N S +R + EI + +++ TI+ A+ + D +GR +A+AC
Sbjct: 63 NSVSHERTINKGREEIRQIVSSLHVAGGDTIISMAHRYYTLAVDKNFTRGRRTTHVAAAC 122
Query: 557 LYIACRQ 577
LYIACRQ
Sbjct: 123 LYIACRQ 129
>UniRef50_A3DN22 Cluster: Zinc finger, TFIIB-type domain protein;
n=1; Staphylothermus marinus F1|Rep: Zinc finger,
TFIIB-type domain protein - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 199
Score = 37.1 bits (82), Expect = 0.58
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +2
Query: 134 LIEDYRAGDMICSECGLVVGDRVIDVG 214
LI DY +G+++CS+CGLVV D++ D G
Sbjct: 12 LIWDYESGEVVCSKCGLVV-DKIYDYG 37
>UniRef50_O94503 Cluster: RNA polymerase II holoenzyme cyclin-like
subunit; n=1; Schizosaccharomyces pombe|Rep: RNA
polymerase II holoenzyme cyclin-like subunit -
Schizosaccharomyces pombe (Fission yeast)
Length = 228
Score = 37.1 bits (82), Expect = 0.58
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 410 INAFREINTMADRINLPKTIVDRANNLFKQVHDGKNL-KGRANDAIASACLYIACRQEGV 586
I ++ + T DR+ L + ++ A L ++ KN KG + +A+ + C+Y++C+ E
Sbjct: 33 IYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC 92
Query: 587 PRTFKEIC 610
P + IC
Sbjct: 93 PVHIRTIC 100
>UniRef50_Q66IW8 Cluster: MGC84252 protein; n=2; Xenopus|Rep:
MGC84252 protein - Xenopus laevis (African clawed frog)
Length = 396
Score = 36.7 bits (81), Expect = 0.77
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +2
Query: 449 INLPKTIVDRANNLFKQVHD---GKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVS 619
+ LP VD A + +KQ + + + I C+YI CRQ+ P T IC++
Sbjct: 83 LRLPDGFVDTALSYYKQAVGLPLYRLVSIEKKEIIVGCCVYITCRQQQWPITMGTICSLI 142
Query: 620 KISKKEIGRCFKLILKALETSV 685
K+ F I++ L+ V
Sbjct: 143 YAKKELFASLFMDIVQVLKVDV 164
>UniRef50_Q1FLV7 Cluster: Chromosome segregation ATPases-like; n=1;
Clostridium phytofermentans ISDg|Rep: Chromosome
segregation ATPases-like - Clostridium phytofermentans
ISDg
Length = 1474
Score = 36.7 bits (81), Expect = 0.77
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +2
Query: 359 VSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRAND 538
+S+ R N S R LIN+ E+N D + L K DR +FK + D +N+K +
Sbjct: 1180 ISQNVKRPNTESETRKLINSLSEVN---DCLTLEK---DR---IFKGIEDMQNIKDNFEN 1230
Query: 539 AIASACLYIACRQEGVPR 592
C+YI E +P+
Sbjct: 1231 QCLQRCIYIKTELERLPK 1248
>UniRef50_Q8JKF9 Cluster: Orf154; n=1; Heliothis zea virus 1|Rep:
Orf154 - Heliothis zea virus 1
Length = 1505
Score = 36.3 bits (80), Expect = 1.0
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 360 TPKLSNDASPRPG--PMIVDKSP-PDKSGFSGPPTRDGSTPDFSLLKVRHSEPTSMTLSP 190
TPK ++ +P+P P V K P P K S P ++ S P+ + S+PTS S
Sbjct: 569 TPKPASTPTPKPASKPDSVSKQPTPSKPTSSKPTSKPASKPESVSKQPTSSKPTSKPTST 628
Query: 189 TTKP 178
TKP
Sbjct: 629 LTKP 632
>UniRef50_Q9HJE9 Cluster: Transcription initiation factor IIB
related protein; n=2; Thermoplasma|Rep: Transcription
initiation factor IIB related protein - Thermoplasma
acidophilum
Length = 228
Score = 36.3 bits (80), Expect = 1.0
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +2
Query: 452 NLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISK 631
+LP+ ++ A L+ + +GR A+ +ACL IA R++ P T K I
Sbjct: 54 DLPENVIVDALKLYLESSSRGVSRGRGCVAVLAACLLIASRRQANPMTLKYIARSMHTDP 113
Query: 632 KEIGRCFKLILKALET 679
+ R I+K ++T
Sbjct: 114 SRVWRTENAIVKNMKT 129
>UniRef50_Q9ZU39 Cluster: Putative transcription factor; n=1;
Arabidopsis thaliana|Rep: Putative transcription factor
- Arabidopsis thaliana (Mouse-ear cress)
Length = 257
Score = 35.5 bits (78), Expect = 1.8
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 521 KGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
KGR + + S+CLY+ACR + F + + ++S E+G + + + L
Sbjct: 7 KGRRAELVQSSCLYLACRDMKISLLFIDFSSYLRVSVYELGSVYLQLCEML 57
>UniRef50_Q54MV3 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 906
Score = 35.5 bits (78), Expect = 1.8
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Frame = -1
Query: 369 YLETPKLSND------ASPRPG---PMIVDKSPPDKSGFSGPPTRDGSTPDFSLLKVRHS 217
+ ETPK+SN +SP P P+IV+K P KS + PP R S+P K +
Sbjct: 698 FSETPKISNSPPSPSSSSPSPPHNQPIIVNKPIPSKS--APPPVRTTSSPSIVTKKFVPT 755
Query: 216 EPTSMTL----SPTTKPHSEHI 163
PT T S T P ++H+
Sbjct: 756 IPTQTTTASSSSTPTTPKNQHL 777
>UniRef50_Q9AVY2 Cluster: TFIIB related factor hBRF; n=1; Guillardia
theta|Rep: TFIIB related factor hBRF - Guillardia theta
(Cryptomonas phi)
Length = 394
Score = 35.1 bits (77), Expect = 2.4
Identities = 40/194 (20%), Positives = 81/194 (41%)
Frame = +2
Query: 104 VVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 283
++CY + + DY+ G +IC+ CG V+ + D+ + F E +
Sbjct: 1 MICYECKNKEIFFDYKNGKIICNCCGYVIKE---DISNPDLNFIKENKS----------S 47
Query: 284 PLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPK 463
L G +ST I + N +N++S + R+ + + +NL +
Sbjct: 48 TKLEGKIISTKINHFKN-------------NNQNLNSGIK------RKFHIYGNLLNLNQ 88
Query: 464 TIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 643
++++ L+ ++ + + + D +CLY+ R E P + +S+I +IG
Sbjct: 89 INIEKSMTLYLKISEINFVINKKVDLYIISCLYMISRFEKTPHLLVDFSDISQIRTNKIG 148
Query: 644 RCFKLILKALETSV 685
F I K L+ +
Sbjct: 149 VEFLKISKNLKMEI 162
>UniRef50_Q16P27 Cluster: Sarcolemmal associated protein, putative;
n=1; Aedes aegypti|Rep: Sarcolemmal associated protein,
putative - Aedes aegypti (Yellowfever mosquito)
Length = 585
Score = 34.7 bits (76), Expect = 3.1
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 241 LIAKSTPLRTDVYDSVSDHQTAFRTYHITRSVILDKGRIRVSIANHFIRLNSRCTR 74
L+AK T++ + H+T Y + R VILDK R+R + N ++L++ T+
Sbjct: 152 LMAKFDAQDTELKEQSKRHKTTL--YEMERKVILDKDRLRKDVENKLLQLSTEFTK 205
>UniRef50_Q2H655 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 729
Score = 34.7 bits (76), Expect = 3.1
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -1
Query: 336 SPRPGPMIVDKSPPDKSGFSGPPTRD---GSTPDFSLLKVRHSEPTSMTLSPTTKPHSEH 166
+PRPG DKS P + GPP ++ G+ P FS T T PH++H
Sbjct: 363 APRPGTPTPDKSNPSTTN-HGPPKKEKATGNKPPFSPPPNPPHNGTDQQTQTTNTPHNKH 421
Query: 165 IISP 154
SP
Sbjct: 422 GPSP 425
>UniRef50_A0V175 Cluster: Major facilitator superfamily MFS_1; n=1;
Clostridium cellulolyticum H10|Rep: Major facilitator
superfamily MFS_1 - Clostridium cellulolyticum H10
Length = 414
Score = 34.3 bits (75), Expect = 4.1
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +2
Query: 230 FSNEKSGVDPSRVGGPENPLLSGGDLS 310
F N+KSG PSR G E+P+L+G DLS
Sbjct: 197 FENKKSG--PSRAAGQESPVLTGSDLS 221
>UniRef50_O22514 Cluster: Proline rich protein; n=1; Santalum
album|Rep: Proline rich protein - Santalum album (white
sandalwood)
Length = 326
Score = 34.3 bits (75), Expect = 4.1
Identities = 24/69 (34%), Positives = 29/69 (42%)
Frame = -1
Query: 360 TPKLSNDASPRPGPMIVDKSPPDKSGFSGPPTRDGSTPDFSLLKVRHSEPTSMTLSPTTK 181
+P S SP PGP +P S S PPT DG TP + P + SP+ K
Sbjct: 136 SPPESASPSPSPGPPAATPTPRPSSPTSTPPT-DGETPRPPGPRSPSPSPGPPSCSPSPK 194
Query: 180 PHSEHIISP 154
S SP
Sbjct: 195 SPSPPASSP 203
>UniRef50_Q387K4 Cluster: Transcription factor, putative; n=2;
Trypanosoma|Rep: Transcription factor, putative -
Trypanosoma brucei
Length = 608
Score = 34.3 bits (75), Expect = 4.1
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +2
Query: 395 TDRALINAFREINTMADRINL---PKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYI 565
T+ +I+ ++ A+++NL +++V A + + +HD GR + A L +
Sbjct: 162 TEVPVIDPSCVVHRFAEQMNLGQMTRSVVVCALKVLRAMHDDWIACGRRPLGVCVAALLV 221
Query: 566 ACRQEGVPRTFKEICAVSKISKKEIGR 646
AC +PR+ E+C +++ I R
Sbjct: 222 ACYMFNIPRSPDEVCGFVRLTAGTISR 248
>UniRef50_Q8SRY7 Cluster: TRANSCRIPTION INITIATION FACTOR TFIII B
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep:
TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT -
Encephalitozoon cuniculi
Length = 395
Score = 34.3 bits (75), Expect = 4.1
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 521 KGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
KG++ SAC+YI CRQE P + I +IG+ F I L
Sbjct: 108 KGKSILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNML 158
>UniRef50_Q9FJK7 Cluster: Cyclin-C1-2; n=2; Arabidopsis
thaliana|Rep: Cyclin-C1-2 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 253
Score = 34.3 bits (75), Expect = 4.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 377 RRNISSTDRALINAFRE--INTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIAS 550
+R IS D LI I+ +A I + + +V A ++V+ K+L +A
Sbjct: 29 QRGISVEDFRLIKLHMSNYISKLAQHIKIRQRVVATAVTYMRRVYTRKSLTEYEPRLVAP 88
Query: 551 ACLYIACRQE 580
CLY+AC+ E
Sbjct: 89 TCLYLACKAE 98
>UniRef50_UPI0000DA1AA5 Cluster: PREDICTED: hypothetical protein;
n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 162
Score = 33.9 bits (74), Expect = 5.5
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 339 ASPRPGPMIVDKSPPDKSGFSGPP-TRDGSTPDFSLLKVRHSEPTSMTLSPT 187
ASPRPG + ++PP++ PP T STP H+ P + TLSP+
Sbjct: 22 ASPRPGAIQDPRAPPEQVRQDSPPVTTPASTPP------EHTAPPTSTLSPS 67
>UniRef50_Q0S381 Cluster: Putative uncharacterized protein; n=1;
Rhodococcus sp. RHA1|Rep: Putative uncharacterized
protein - Rhodococcus sp. (strain RHA1)
Length = 292
Score = 33.9 bits (74), Expect = 5.5
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 293 SGGDLST-IIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTI 469
SG D S + P GD+S G + Q ++ + TDR I + T D + + + I
Sbjct: 17 SGSDSSQPSLAPTPGDSSQMEIGGAVQQPAKDQAPTDRQEIITGQVALTADDPVAVGRQI 76
Query: 470 VDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEI 640
VD+ ++L +V G ++D AS+ L I + + +T ++ + K++ +
Sbjct: 77 VDKVDDLGGRVDQLTEQPG-SDDQDASSSLTIRVPADSLTQTLDDLRELGKVTSVSV 132
>UniRef50_Q3E7U7 Cluster: Uncharacterized protein At5g39230.1; n=1;
Arabidopsis thaliana|Rep: Uncharacterized protein
At5g39230.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 119
Score = 33.9 bits (74), Expect = 5.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 143 DYRAGDMICSECGLVVGDRVI 205
DYR+GD IC+ECGL++ I
Sbjct: 18 DYRSGDTICTECGLILDSHYI 38
>UniRef50_Q0WVQ3 Cluster: Putative transcription factor; n=5;
Arabidopsis thaliana|Rep: Putative transcription factor
- Arabidopsis thaliana (Mouse-ear cress)
Length = 604
Score = 33.9 bits (74), Expect = 5.5
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 389 SSTDRALINAFREINTMADRINLPKT---IVDRANNLFKQVHDGKNLKGRANDAIASACL 559
SS +R A E+ + D + + ++ A F+ + KGR + + ++CL
Sbjct: 65 SSRERRFRIARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQASCL 124
Query: 560 YIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKAL 673
Y+ CR+ + + + ++S E+G + + + L
Sbjct: 125 YLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEML 162
>UniRef50_UPI0000F2186B Cluster: PREDICTED: hypothetical protein; n=1;
Danio rerio|Rep: PREDICTED: hypothetical protein - Danio
rerio
Length = 11202
Score = 33.5 bits (73), Expect = 7.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 345 NDASPRPGPMIVDKSPPDKSGFSGPPTRDGSTP 247
N S P P++ DKSP S PP RDG +P
Sbjct: 7070 NPPSQPPAPVVTDKSPSSVSLSWTPPDRDGGSP 7102
>UniRef50_UPI0000DC0483 Cluster: UPI0000DC0483 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0483 UniRef100 entry -
Rattus norvegicus
Length = 318
Score = 33.5 bits (73), Expect = 7.2
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -1
Query: 357 PKLSNDASPRPGPMIVDKSPPDKSGFSGPP---TRDGSTPDFSLLKVRHSEPTSMTLSP 190
PK S+ S P P SPP S PP GSTP + K R + PT+ P
Sbjct: 210 PKASSSPSSSPPPPSSPSSPPPPSSPPPPPPPSPSSGSTPGLEMWKTRWNFPTTPNKFP 268
>UniRef50_Q9HXK1 Cluster: Putative uncharacterized protein; n=7;
Pseudomonas aeruginosa|Rep: Putative uncharacterized
protein - Pseudomonas aeruginosa
Length = 195
Score = 33.5 bits (73), Expect = 7.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 260 SRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALIN 415
S +GG N +S D+S + G G+ DS GVS+ + ++SS L+N
Sbjct: 121 SWIGGGPNQSVSAADISRVFGDGQLQQLADSAGVSQGEAAEHLSSLLPELVN 172
>UniRef50_Q97I30 Cluster: ATP-dependent Clp proteinase; n=5;
Bacteria|Rep: ATP-dependent Clp proteinase - Clostridium
acetobutylicum
Length = 750
Score = 33.5 bits (73), Expect = 7.2
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Frame = +2
Query: 290 LSGG--DLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPK 463
+SGG D + I+ P D G + Y + I DRAL F++I+ IN
Sbjct: 298 VSGGTVDAANILKPYFTDGKIKFIGSTTYDEYKKIFDKDRALSRRFQKIDVGEPTINETY 357
Query: 464 TIVDRANNLFKQVHD--GKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKE 637
I+ ++Q H+ N +A A+++ C+ + E A +++++K+
Sbjct: 358 DILMGIKTRYEQFHNVHYTNASLKAAAALSAKCINDRFLPDKAIDVIDECGAFAEMNRKD 417
Query: 638 IGRCF 652
+ +
Sbjct: 418 TEKVY 422
>UniRef50_Q86I54 Cluster: Similar to Leishmania major. Ppg3; n=2;
Dictyostelium discoideum|Rep: Similar to Leishmania
major. Ppg3 - Dictyostelium discoideum (Slime mold)
Length = 474
Score = 33.5 bits (73), Expect = 7.2
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 360 TPKLSNDASPRPGPMIVDKSPPDKSGFSGPPTRDGSTPDFSLLKVRHSEPTSM-TLSPTT 184
+P S +SP P + S P S S P + S+P +P+S + SP++
Sbjct: 77 SPSSSPSSSPSSSPSVSPSSSPSSSPSSSPSSSPSSSPSSLPSSSPSVQPSSSPSSSPSS 136
Query: 183 KPHSEHIISPAL*SSIRGAS 124
P ++ SP+ S++ +S
Sbjct: 137 SPSAQPSSSPSSSQSVQPSS 156
>UniRef50_Q4Q3N5 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1037
Score = 33.5 bits (73), Expect = 7.2
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -1
Query: 363 ETPKLSNDASPRPGPMIVDKSPPDKSGFSGPPTRDGSTPDFSLLKVRHSEPTSMTLSPT 187
+ P L++D P+P P + P S + PP S P + H+ +S T + T
Sbjct: 264 DIPLLADDVRPKPKPAAPNAPTPQTSAVTKPPASKPSEPPNEATETAHAVDSSSTTNAT 322
>UniRef50_Q9NUY6 Cluster: CDNA FLJ11052 fis, clone PLACE1004645;
n=20; Amniota|Rep: CDNA FLJ11052 fis, clone PLACE1004645
- Homo sapiens (Human)
Length = 419
Score = 33.5 bits (73), Expect = 7.2
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +2
Query: 401 RALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKG---RANDAIASACLYIAC 571
R+ R + + + LP T D A ++Q + ++ + + + C+ I C
Sbjct: 67 RSQQRGLRRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRAARLQKKEVLVGCCVLITC 126
Query: 572 RQEGVPRTFKEICAV 616
RQ P T IC +
Sbjct: 127 RQHNWPLTMGAICTL 141
>UniRef50_Q498K4 Cluster: LOC494709 protein; n=5; cellular
organisms|Rep: LOC494709 protein - Xenopus laevis
(African clawed frog)
Length = 1610
Score = 33.1 bits (72), Expect = 9.5
Identities = 24/70 (34%), Positives = 31/70 (44%)
Frame = -1
Query: 357 PKLSNDASPRPGPMIVDKSPPDKSGFSGPPTRDGSTPDFSLLKVRHSEPTSMTLSPTTKP 178
P LS ASP P P D P S GPPT S+P S S +S SP
Sbjct: 970 PVLSPTASPSPPPSPADD--PSVSASPGPPTLSSSSPTSS-----SSSSSSSCSSPPPLS 1022
Query: 177 HSEHIISPAL 148
+++SP++
Sbjct: 1023 VVSYVVSPSV 1032
>UniRef50_Q9GQB1 Cluster: Type IV collagen alpha 1 chain precursor;
n=1; Hydra vulgaris|Rep: Type IV collagen alpha 1 chain
precursor - Hydra attenuata (Hydra) (Hydra vulgaris)
Length = 1723
Score = 33.1 bits (72), Expect = 9.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 309 DKSPPDKSGFSGPPTRDGSTPDFSLLKVRHSEPTSMTLSP 190
D+ PP +G GPP R GS DF V+HS+ + P
Sbjct: 1479 DQGPPGDAGKVGPPGRSGS-GDFGFYLVKHSQSIKVPSCP 1517
>UniRef50_Q8IHE4 Cluster: AT09308p; n=3; Sophophora|Rep: AT09308p -
Drosophila melanogaster (Fruit fly)
Length = 424
Score = 33.1 bits (72), Expect = 9.5
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = -1
Query: 357 PKLSNDASPRPGPMIVDKSPPDKSGFSGPPTRDGSTPDFSLLKVRHSEPTSMTLSPTTKP 178
P++SN RP I DKS ++ P+ + P V+ ++ +S LS TT P
Sbjct: 211 PEISNQCQQRPDVAIQDKSQQTTMTYAPKPSARAAQPG-----VKKTQSSSAPLS-TTSP 264
Query: 177 HSEHIIS 157
HS ++S
Sbjct: 265 HSSMLLS 271
>UniRef50_Q4FW71 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 796
Score = 33.1 bits (72), Expect = 9.5
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 363 ETPKLSNDASPRPGPMIVDKSPPDKSGFSGPPTRDGSTPDFSLLKVRHSEPTSMTLSP 190
+TP S RP P K+ P SG +G PT S D LL + + S +P
Sbjct: 457 QTPHHSQSQPSRPAPATAIKAAPRSSGSTGVPTGAWSAADLELLLKKGATMISSAPAP 514
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,848,056
Number of Sequences: 1657284
Number of extensions: 18351567
Number of successful extensions: 56786
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 52715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56568
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78292544701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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