Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B02
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 181 1e-46
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 50 6e-07
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 37 0.003
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.22
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 31 0.28
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 29 1.1
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 4.6
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 8.1
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 181 bits (441), Expect = 1e-46
Identities = 95/203 (46%), Positives = 129/203 (63%), Gaps = 5/203 (2%)
Frame = +2
Query: 80 TSRIEANKVVCYAHPDAP-LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSN--EKSG 250
TS + + D P L+E++ +GD +C CGLV+GDR+ID SEWRTFSN E SG
Sbjct: 11 TSMLSVKMICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASG 70
Query: 251 VDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFG--VSKYQNRRNISSTDRALINAFR 424
DPSRVG NPLL+G L T I +S+D G ++K Q R ++ L+ A++
Sbjct: 71 -DPSRVGKVANPLLNGSQLDTTI------SSYDGAGAMLAKAQGRSVQVRGEKNLLTAYK 123
Query: 425 EINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKE 604
EI M D I+LPK I D A L+K+V D K LKG+++ +I +AC+YIACRQ VPRTF E
Sbjct: 124 EIGAMCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFME 183
Query: 605 ICAVSKISKKEIGRCFKLILKAL 673
IC ++ + KKEIGR +K + + L
Sbjct: 184 ICTLTNVPKKEIGRVYKTLQRML 206
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 443 DRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK 622
+R+ LP ++ A L ++ L GR+ +IA++ +Y+ G P+T KEI V+
Sbjct: 241 NRLMLPMSVQSAAAELARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEVTG 300
Query: 623 ISKKEIGRCFKLI 661
+S I +KL+
Sbjct: 301 VSDSTIRIAYKLL 313
Score = 34.7 bits (76), Expect = 0.017
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 721 FCSNLGLPNSVQRAATHIARKAGELDIVSGKS 816
FC+ L LP SVQ AA +AR+AG ++G+S
Sbjct: 239 FCNRLMLPMSVQSAAAELARRAGLQGTLAGRS 270
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 49.6 bits (113), Expect = 6e-07
Identities = 29/128 (22%), Positives = 61/128 (47%)
Frame = +2
Query: 350 SFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGR 529
+FG Y+N+ ++ S + + N R I+ +A + L + ++ A F + +KGR
Sbjct: 72 TFG-GPYRNQGSVESRELTIANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIKGR 130
Query: 530 ANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALETSV*SHYNSRF 709
+ + ++CLYI CR + + +I+ ++G F + + L ++ +
Sbjct: 131 RSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVLRPNL-PLLDPSL 189
Query: 710 YVSGFARI 733
Y+S FA +
Sbjct: 190 YISRFASL 197
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 410 INAFREINTMADRINLPKTIVDRANNLFKQVHDGKNL-KGRANDAIASACLYIACRQEGV 586
I ++ + T DR+ L + ++ A L ++ KN KG + +A+ + C+Y++C+ E
Sbjct: 33 IYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC 92
Query: 587 PRTFKEIC 610
P + IC
Sbjct: 93 PVHIRTIC 100
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 31.1 bits (67), Expect = 0.22
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = -1
Query: 369 YLETPKLSNDASPRPGPMIVDKSPPDKSGFSGPPTRDGSTPDFSLLKVRHS-------EP 211
+ E K S+ S P +V P S +G + P SL V +S E
Sbjct: 189 FFEPKKSSSFVSRAASPAMVGPGVPFYSSITGA-NGNVLAPSGSLKAVENSDVIESSAED 247
Query: 210 TSMTLSPTTKPHSEHIISPAL*SSI 136
+S T +P+TKP +E ISP L SS+
Sbjct: 248 SSNTDNPSTKPSNEMPISPLLSSSV 272
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 30.7 bits (66), Expect = 0.28
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 446 RINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICA-VSK 622
R+ LP+T + AN F + + +LK +A+ C+++A + E R ++I +K
Sbjct: 57 RLKLPQTALATANIYFHRFYLRFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAK 116
Query: 623 ISKK 634
+++K
Sbjct: 117 VAQK 120
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -1
Query: 309 DKSPPDKSGFSGPPTRDGSTPD-----FSLLKVRHSEPTSMTLSPTTKPHSEHIISPAL* 145
DKS ++ S ++DGS D L V +++PTS++LSPT +I
Sbjct: 83 DKSTGQEADKSQNQSKDGSITDPVQAAVLALSVAYAKPTSVSLSPTDLQAQSKLIEKPRR 142
Query: 144 SSIRGASG 121
S A+G
Sbjct: 143 RSASNATG 150
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 713 HKIC-CCNEIKLKSPVLSESI*NTFLFLF 630
+K+C CCN + L +P + + + F +LF
Sbjct: 127 NKVCECCNHMLLDNPKIKQDLPFAFCYLF 155
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 814 SLFQLLQLPFIWLTGIRRQ 870
S+F LL+ FIWL + RQ
Sbjct: 528 SMFGLLRYQFIWLASVSRQ 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,638,234
Number of Sequences: 5004
Number of extensions: 78268
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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