Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B02
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022981-12|AAG24202.2| 306|Caenorhabditis elegans Tfii(two)b (... 250 8e-67
U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcript... 42 8e-04
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 2.5
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 2.5
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 29 3.3
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 5.8
AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical ... 29 5.8
U97005-10|AAK72084.1| 646|Caenorhabditis elegans Hypothetical p... 28 7.6
>AF022981-12|AAG24202.2| 306|Caenorhabditis elegans Tfii(two)b
(general transcriptionfactor) protein 1 protein.
Length = 306
Score = 250 bits (613), Expect = 8e-67
Identities = 116/194 (59%), Positives = 155/194 (79%)
Frame = +2
Query: 104 VVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 283
V C HPD LIED+RAGD++C CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5 VQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64
Query: 284 PLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPK 463
PLLSGGDLST I G G + D+ ++ Q R+++++TDR + A I M++RI+LP+
Sbjct: 65 PLLSGGDLSTTIAVGFGGSDSDN-SLANAQ-RKSMNNTDRQMTAAMSLIREMSERIHLPR 122
Query: 464 TIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIG 643
I D A+ +FK V + K L+G+ N+A A+ACLYIACR++GVPRTFKEICAVS++SKKEIG
Sbjct: 123 NIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIG 182
Query: 644 RCFKLILKALETSV 685
RCFK+I+++LET++
Sbjct: 183 RCFKIIVRSLETNL 196
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +1
Query: 721 FCSNLGLPNSVQRAATHIARKAGELDIVSGKS 816
FC NL LPNS+Q AAT IA+ A ++D+V+G++
Sbjct: 208 FCGNLSLPNSIQAAATRIAKCAVDMDLVAGRT 239
Score = 36.3 bits (80), Expect = 0.029
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +2
Query: 449 INLPKTIVDRANNLFKQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKIS 628
++LP +I A + K D + GR +IA+A +Y+A + R+ KEI V+ +
Sbjct: 212 LSLPNSIQAAATRIAKCAVDMDLVAGRTPISIAAAAIYMASQASAEKRSAKEIGDVAGAA 271
Query: 629 KKEIGRCFKLIL-KALE 676
+ + + +KL+ KALE
Sbjct: 272 EITVRQTYKLLYPKALE 288
>U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcription
factor) homologprotein 1 protein.
Length = 759
Score = 41.5 bits (93), Expect = 8e-04
Identities = 38/196 (19%), Positives = 81/196 (41%)
Frame = +2
Query: 140 EDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTII 319
ED GD C+ CG V+ + ++ ++++ R GG SG T++
Sbjct: 15 EDAARGDATCTACGTVLEESIVVTENQFQ-----------ERAGG------SG---HTLV 54
Query: 320 GPGRGDASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQ 499
G S + + + + S + + I+ + ++ + ++ A N +K
Sbjct: 55 GQF---VSSERAAANNFNGMGSQESREMTYAKGRKVIDELGSQLRINSHCMNTAFNFYKM 111
Query: 500 VHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGRCFKLILKALET 679
+GR ++ + C+YI CR E + V++I+ ++GR + ++L
Sbjct: 112 CVSRNLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRNLNYLSRSLRI 171
Query: 680 SV*SHYNSRFYVSGFA 727
++ S + Y+ FA
Sbjct: 172 NLPS-TDPCLYIMRFA 186
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 327 PGPMIVDKSPPDKS-GFSGPPTRDGSTPDFSLLKVRHSEPTSMTLSPTTKPHSEHIISPA 151
PG + SP S G P S+P FS+ +S PTS + SPT+ + +SP+
Sbjct: 1553 PGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYS-PTSPSYSPTSPAAGQSPVSPS 1611
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 327 PGPMIVDKSPPDKS-GFSGPPTRDGSTPDFSLLKVRHSEPTSMTLSPTTKPHSEHIISPA 151
PG + SP S G P S+P FS+ +S PTS + SPT+ + +SP+
Sbjct: 1560 PGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYS-PTSPSYSPTSPAAGQSPVSPS 1618
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -1
Query: 369 YLETPKLSNDASPRPG---PMIVDKSPPDKSGFSGPPTRDGS 253
Y+ P ++ A P G P+I + PP + G G P DGS
Sbjct: 83 YVTIPPTNSYAVPEVGGSMPLICPEGPPGRPGHPGHPGEDGS 124
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 408 KALSVLLMFLLF*YLETPKLSNDASPRPGPMIVDKSPPDKSGFSGPPTRDGSTP 247
KAL VL++ L+ ++ L + +SP P P PP G S P G+ P
Sbjct: 35 KALGVLVLVLVAHAVDPSDLPDPSSPPPAPR-PSGQPPGPQGPSDLPGPSGAPP 87
>AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical
protein F32B5.7 protein.
Length = 792
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 303 SPPDKSGF-SGPPTRDGSTPDFSLLKVRHSEPTSMTLSPT 187
SPP SG + PPT S PD++ S P M+ + T
Sbjct: 18 SPPSGSGSGTAPPTTATSPPDYATAATLRSTPAQMSAAIT 57
>U97005-10|AAK72084.1| 646|Caenorhabditis elegans Hypothetical
protein F19F10.12 protein.
Length = 646
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 512 KNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSKISKKEIGR-CFKLILKAL 673
KNLK + + + A IAC FK + A KI++++ GR +LKAL
Sbjct: 517 KNLKFKQHPSKKLAVASIACHLSAYNDDFKLVPAKVKIARRKYGRITLAKVLKAL 571
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,276,801
Number of Sequences: 27780
Number of extensions: 454116
Number of successful extensions: 1496
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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