Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_B02
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    30   0.024
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    30   0.024
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 30.3 bits (65), Expect = 0.024
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
 Frame = +2

Query: 212 GSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGR----GDASFDSFGVSKYQNR 379
           G+ W +  N  S +  S VG P++PL    D +++I PG     G  S  SF    + N 
Sbjct: 26  GNTWLSLDN--SNMSMSSVG-PQSPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNL 82

Query: 380 RNIS-STDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASAC 556
            + S S     +  +   + ++   +L     DRA+     V+  +  KG     +    
Sbjct: 83  LSTSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL 142

Query: 557 LYIACRQE 580
            Y ACR+E
Sbjct: 143 SY-ACREE 149


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 30.3 bits (65), Expect = 0.024
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
 Frame = +2

Query: 212 GSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGR----GDASFDSFGVSKYQNR 379
           G+ W +  N  S +  S VG P++PL    D +++I PG     G  S  SF    + N 
Sbjct: 26  GNTWLSLDN--SNMSMSSVG-PQSPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNL 82

Query: 380 RNIS-STDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKNLKGRANDAIASAC 556
            + S S     +  +   + ++   +L     DRA+     V+  +  KG     +    
Sbjct: 83  LSTSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL 142

Query: 557 LYIACRQE 580
            Y ACR+E
Sbjct: 143 SY-ACREE 149


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 360 TPKLSNDASPRPGPMIVDKSPPDKSGFSGPPTR 262
           TP  SN  SP P P  +D + P +     PP +
Sbjct: 436 TPPSSNPVSPVPSPDPLDLAIPVRETLILPPRK 468


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 207 SMTLSPTTKPHSEHIIS 157
           SM  S TT P  EH+++
Sbjct: 632 SMCTSTTTSPDKEHVLA 648


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 233 SNEKSGVDPSRVGGPENPLLSG 298
           SNE S V    + GPE  +LSG
Sbjct: 268 SNEMSKVKVIDMTGPEQRILSG 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,439
Number of Sequences: 438
Number of extensions: 5260
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)