Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_B01
(1321 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 33 2.3
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 33 2.3
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 33 2.3
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 33 2.3
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 33 2.3
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 33 2.3
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 33.1 bits (72), Expect = 2.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRT 690
R +R + TP R+ TR+P R R P R+ ++ ++ ++GR+
Sbjct: 607 RTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRS 658
Score = 32.3 bits (70), Expect = 4.1
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRTXEAPRXXS 714
R +R + TP R+ +RTP R R P R+ ++ RT R S
Sbjct: 576 RTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 635
Query: 715 XXGARATXTG 744
+ A +G
Sbjct: 636 RSRSPARRSG 645
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 33.1 bits (72), Expect = 2.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRT 690
R +R + TP R+ TR+P R R P R+ ++ ++ ++GR+
Sbjct: 607 RTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRS 658
Score = 32.3 bits (70), Expect = 4.1
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRTXEAPRXXS 714
R +R + TP R+ +RTP R R P R+ ++ RT R S
Sbjct: 576 RTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 635
Query: 715 XXGARATXTG 744
+ A +G
Sbjct: 636 RSRSPARRSG 645
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 33.1 bits (72), Expect = 2.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRT 690
R +R + TP R+ TR+P R R P R+ ++ ++ ++GR+
Sbjct: 607 RTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRS 658
Score = 32.3 bits (70), Expect = 4.1
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRTXEAPRXXS 714
R +R + TP R+ +RTP R R P R+ ++ RT R S
Sbjct: 576 RTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 635
Query: 715 XXGARATXTG 744
+ A +G
Sbjct: 636 RSRSPARRSG 645
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 33.1 bits (72), Expect = 2.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRT 690
R +R + TP R+ TR+P R R P R+ ++ ++ ++GR+
Sbjct: 572 RTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRS 623
Score = 32.3 bits (70), Expect = 4.1
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRTXEAPRXXS 714
R +R + TP R+ +RTP R R P R+ ++ RT R S
Sbjct: 541 RTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 600
Query: 715 XXGARATXTG 744
+ A +G
Sbjct: 601 RSRSPARRSG 610
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 33.1 bits (72), Expect = 2.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRT 690
R +R + TP R+ TR+P R R P R+ ++ ++ ++GR+
Sbjct: 397 RTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRS 448
Score = 32.3 bits (70), Expect = 4.1
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRTXEAPRXXS 714
R +R + TP R+ +RTP R R P R+ ++ RT R S
Sbjct: 366 RTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 425
Query: 715 XXGARATXTG 744
+ A +G
Sbjct: 426 RSRSPARRSG 435
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 33.1 bits (72), Expect = 2.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRT 690
R +R + TP R+ TR+P R R P R+ ++ ++ ++GR+
Sbjct: 655 RTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRS 706
Score = 32.3 bits (70), Expect = 4.1
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +1
Query: 535 RXXKKRXGDXTTTPXERKGNTRTPPXRXXRKAXPTRKHXKNDNQRXGQKGRTXEAPRXXS 714
R +R + TP R+ +RTP R R P R+ ++ RT R S
Sbjct: 624 RTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 683
Query: 715 XXGARATXTG 744
+ A +G
Sbjct: 684 RSRSPARRSG 693
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.305 0.126 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,122,095
Number of Sequences: 237096
Number of extensions: 736824
Number of successful extensions: 594
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 19101041810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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