Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_A24
(950 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 130 3e-31
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 57 3e-09
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.24
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23... 26 0.31
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 30 0.55
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 30 0.55
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.9
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 27 5.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 5.1
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 26 6.8
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 9.0
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 9.0
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 9.0
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 130 bits (314), Expect = 3e-31
Identities = 64/133 (48%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Frame = +1
Query: 310 RTLNRFYSANNYTKIPRVCIVGAGPAGFYAAMHLTKNI-QCKIDLIEKLPVPFGLIRYGV 486
R + R YS T P V I+G+GPA FY A L +N KID+ E PVPFGL+RYGV
Sbjct: 4 RFIKRTYSTQ--TSSPVVGIIGSGPAAFYTAHRLLRNDPNVKIDMFESRPVPFGLVRYGV 61
Query: 487 APDHPEVKNVINQFTKVAQRPEVNFXGNVTLGKDITLHQLRQHYDAVLXTYGAEKDKTLG 666
APDHPEVK+V ++F+++A+ + F GNV +G D++L L ++YD ++ YGA DK LG
Sbjct: 62 APDHPEVKHVEHKFSEIAESTQFRFLGNVNVGTDVSLRDLTKNYDCLVLAYGAAGDKRLG 121
Query: 667 IENENAQNVIXAR 705
I E+ V AR
Sbjct: 122 IPGEDLSGVYSAR 134
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 57.2 bits (132), Expect = 3e-09
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Frame = +1
Query: 358 RVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKV 537
RV I+G+GPAG AA L + + + E+ P GL++YG+ P+ K V+ + ++
Sbjct: 1757 RVAIIGSGPAGLAAADQLNR-AGHHVVIYERADRPGGLLQYGI-PNMKLDKKVVERRIQL 1814
Query: 538 AQRPEVNFXGNVTLGK--DITLHQLRQHYDAVLXTYGAEKDKTLGIENENAQNVIXARHF 711
+ NV +GK D++L +L + YDAV+ G+ + L I N +++ + A F
Sbjct: 1815 MIDEGIEVLTNVEVGKNGDVSLDELHKVYDAVVLASGSTVPRDLPIPNRDSKGIHFAMEF 1874
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 31.1 bits (67), Expect = 0.24
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = +1
Query: 502 EVKNVINQFTKVAQRPE----VNFXG--NVTLGKDITLHQLRQHYDAVLXTYGAEKDKTL 663
E+K++ N+ TK Q PE + F G +V L +H ++ ++ A + K +
Sbjct: 442 EIKDLSNKVTKTIQLPEKTRDIFFAGMGHVLLSTATQVHLFDLQQKKIVSSFNANRVKYV 501
Query: 664 GIENENAQNVIXARHF 711
N+N+Q + +H+
Sbjct: 502 VWSNDNSQAALLGKHY 517
>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 26.2 bits (55), Expect(2) = 0.31
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 517 SHFLLQGDLELHHILLIRRVPEVFLLNQSC 428
+ F L G++ L + + R V+LLN+SC
Sbjct: 247 AQFRLLGNISLVDVKYVTRSSSVYLLNKSC 276
Score = 23.0 bits (47), Expect(2) = 0.31
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 340 YLLNKICSKFLXXRKS 293
YLLNK C+ FL KS
Sbjct: 270 YLLNKSCAHFLSVIKS 285
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 29.9 bits (64), Expect = 0.55
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +1
Query: 361 VCIVGAGPAGFYAAMHLTK-----NIQCKIDLIEKLPVP 462
VCIVGAGPAG AA+ + + N ++ ++EK P
Sbjct: 93 VCIVGAGPAGLSAAIRIKQQAAKANRDIRVVVLEKAAEP 131
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 29.9 bits (64), Expect = 0.55
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 361 VCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVP 462
V IVGAG G AA+ LTK I ++++ P P
Sbjct: 7 VIIVGAGVFGLSAALELTKRGGYTIKILDRAPPP 40
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 373 GAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQ 525
GAG + L +N+Q + ++PV L R G DHP VKN+I +
Sbjct: 349 GAGSSLLENPGRLLRNLQGMDAVSGQIPVTVKL-RMGNKDDHPVVKNLIGR 398
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 358 RVCIVGAGPAGFYAAMHLTK 417
+V I+G+GPAG AA++L +
Sbjct: 5 KVVIIGSGPAGHTAAIYLAR 24
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 345 HKNSSSMYCWSWSCRLLCRH 404
HKN SS W+W + L +H
Sbjct: 418 HKNDSSARTWNWKSKTLGQH 437
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 355 PRVCIVGAGPAGFYAAMHL-TKNIQCKIDLIEK 450
P VCI+G G AA +L KN + KI + +
Sbjct: 158 PHVCIIGGGKGASVAAEYLREKNFKGKITIFTR 190
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 478 YGVAPDHPEVKNVINQFTKVAQRPEVNFXGNVTLGKDITLHQLR 609
+ A H EV + ++FT+ + P++ +V + DI L + R
Sbjct: 201 FASADSHSEVARLADEFTRDSGLPDLENLSHVNVLLDIALDKFR 244
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 730 PXYPSNGNVWLQXHSGRFRFLYQESY 653
P Y S N L+ + GRF+ +QE Y
Sbjct: 216 PLYLSTKNTILKKYDGRFKDTFQEVY 241
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 352 IPRVCIVGAGPAGFYAAMH-LTKNIQCKIDLIEKLPVPFGLIRY 480
I ++ I+GAGP+G A L + ++ L E+ P G+ Y
Sbjct: 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,830
Number of Sequences: 5004
Number of extensions: 60726
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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