Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_A24
(950 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0435 + 10206569-10206730,10207126-10207230,10207897-102079... 77 2e-14
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 53 4e-07
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031... 52 5e-07
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 32 0.77
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 29 5.4
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.4
06_01_0782 - 5848381-5849394,5851143-5851255,5851337-5851440,585... 29 7.2
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 29 7.2
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 28 9.5
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 28 9.5
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 28 9.5
>02_02_0435 +
10206569-10206730,10207126-10207230,10207897-10207986,
10208256-10208369,10208477-10208530,10208951-10209067,
10209530-10209639,10209752-10209825,10209921-10209982,
10210240-10210435,10210506-10210569,10210789-10210832,
10210974-10211116,10211521-10211751
Length = 521
Score = 77.4 bits (182), Expect = 2e-14
Identities = 33/68 (48%), Positives = 47/68 (69%)
Frame = +1
Query: 514 VINQFTKVAQRPEVNFXGNVTLGKDITLHQLRQHYDAVLXTYGAEKDKTLGIENENAQNV 693
V+NQF++VA F GNVTLG+D++L +LR+ YD V+ YGAE D++LGI E+ + +
Sbjct: 121 VVNQFSRVAANDRCQFYGNVTLGRDVSLSELRKTYDVVVLAYGAESDRSLGIPGEDLRGI 180
Query: 694 IXARHFRW 717
AR F W
Sbjct: 181 HSAREFVW 188
Score = 75.8 bits (178), Expect = 5e-14
Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Frame = +1
Query: 361 VCIVGAGPAGFYAAMHLTKNIQ-CKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKV 537
VC+VG+GPAGFY A + K + ++D+I++LP PFGL+R GVAPDHPE K+ +F +
Sbjct: 39 VCVVGSGPAGFYTADKMLKGHEGAQVDIIDRLPTPFGLVRSGVAPDHPETKSKAIEFDFL 98
Query: 538 AQRPEVN 558
+R N
Sbjct: 99 KKRASYN 105
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 52.8 bits (121), Expect = 4e-07
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +1
Query: 358 RVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKV 537
+V I+G+GPAG AA L K + + + E+ GL+ YGV + ++ + +
Sbjct: 1798 KVAIIGSGPAGLAAADQLNK-MGHFVTVFERADRIGGLMMYGVPNMKTDKIEIVQRRVNL 1856
Query: 538 AQRPEVNFXGNVTLGKD--ITLHQLRQHYDAVLXTYGAEKDKTLGIENENAQNVIXARHF 711
+ F N +G D ++ +LR DAV+ GA K + LGI V A F
Sbjct: 1857 MAEEGITFVVNANVGSDPLYSIERLRSENDAVILACGATKPRDLGIPGRELSGVHFAMEF 1916
>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
27403297-27403449,27403544-27403644,27403945-27404041,
27404542-27404651,27404775-27404878,27405129-27405308,
27405398-27405741,27405841-27405905,27405981-27406450,
27406939-27407793,27408045-27408116,27408475-27408575,
27409069-27409170,27409295-27409456,27409665-27411230,
27411384-27411602,27413924-27414198,27414291-27414596,
27414727-27415012,27415085-27415087,27415162-27415416,
27415537-27415803
Length = 2236
Score = 52.4 bits (120), Expect = 5e-07
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Frame = +1
Query: 358 RVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKV 537
RV IVG+GPAG AA L K + + + E+ GL+ YGV + + ++ + ++
Sbjct: 1867 RVAIVGSGPAGLAAADQLNK-MGHFVTVFERADRIGGLMMYGVPNMKADKEGIVQRRVEL 1925
Query: 538 AQRPEVNFXGNVTLGKD--ITLHQLRQHYDAVLXTYGAEKDKTLGIENE 678
+ V F N +G D ++ +LR DA++ GA K K L + +
Sbjct: 1926 MAKEGVQFIVNAHVGSDPLYSVEKLRSENDAIILACGATKPKALSLSRD 1974
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 31.9 bits (69), Expect = 0.77
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +1
Query: 349 KIPRVCIVGAGPAGFYAAMHLTKNIQCKIDLIEK 450
K PRV +VG+GP+G +A++ L + + ++ LIE+
Sbjct: 237 KKPRVAVVGSGPSGLFASLVLGE-LGAEVTLIER 269
>10_08_0731 +
20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 358 RVCIVGAGPAGFYAAMHLTK 417
++ +VGAGPAG AA HL +
Sbjct: 741 KIIVVGAGPAGLTAARHLQR 760
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 853 GXLKGISLQPXXGAXGGXGPKEXQPGSQGGSISRVXXXXGG 731
G L G +P G GG GP PG+ GG +R GG
Sbjct: 99 GPLGGGGARPPGGGGGG-GPPSLPPGAGGGGGARPPAPGGG 138
>06_01_0782 -
5848381-5849394,5851143-5851255,5851337-5851440,
5851584-5851660,5851740-5852132,5852267-5852482,
5852826-5852923,5853503-5853637,5853745-5853811,
5853999-5854094,5854555-5854683
Length = 813
Score = 28.7 bits (61), Expect = 7.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 355 PRVCIVGAGPAGFYAAMHL 411
PRVCI+G G G Y A+ L
Sbjct: 45 PRVCILGGGFGGLYTALRL 63
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 358 RVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGL 471
R+ IVGAGP+G AA L K + L EK G+
Sbjct: 23 RIGIVGAGPSGLSAAYALAKLGYRNVTLFEKCHTVSGM 60
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 591 DIFS*SNISXKIDLWSLSHFGKLIYHIFYFR 499
D++ IS K+D+W+L G L+Y I YF+
Sbjct: 213 DLYRREVISEKVDIWAL---GCLLYRICYFK 240
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 561 KIDLWSLSHFGKLIYHIFYFRVIWSYTI 478
K+ WSLS G L+ + F + W++T+
Sbjct: 473 KLHHWSLSLIGALLCIVIMFMISWTFTV 500
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 730 PXYPSNGNVWLQXHSGRFRFLYQESY 653
P Y S N L+ + GRF+ ++QE+Y
Sbjct: 249 PLYLSTKNTILKKYDGRFKDIFQENY 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,388,225
Number of Sequences: 37544
Number of extensions: 366823
Number of successful extensions: 641
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -