Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A23
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    49   8e-07
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    34   0.031
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    26   6.3  

>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 24/62 (38%), Positives = 31/62 (50%)
 Frame = +2

Query: 542 VGAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXXSLVGQIAKIKGCRVIGFAGTDDK 721
           VG++GMP  TAY G   I KPK                + GQ+AK  G  V+G  G+D+K
Sbjct: 138 VGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEK 197

Query: 722 VK 727
            K
Sbjct: 198 FK 199



 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 20/41 (48%), Positives = 23/41 (56%)
 Frame = +3

Query: 747 GFDKAFNYKTVDVPAALKEAAPNGIDCYFDNVGGEISSQIL 869
           G+D  FNYK      AL    P GID YF+NVGGE    +L
Sbjct: 205 GYDSVFNYKKESPFKALPRLCPKGIDIYFENVGGETMDAVL 245


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 735 REELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDNVGGEISSQILAK 875
           R++ GF      +  DVP  + E   NG+DC  +  G   S+ IL K
Sbjct: 263 RQKFGFTVIDRNEVSDVPKKIMELVSNGVDCAIEASGFRFSTSILHK 309


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 141 KTQGTTKVEMTSARKYVVKNHFKGVPKREDYELVEFVIPPLIDGEVLX*SRMDQRRPVFK 320
           K Q  ++ E  SARK       + + KR + EL E      I+ E+L     +QR+    
Sbjct: 86  KFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEILESRLQEQRKVALD 145

Query: 321 GLQL 332
            L+L
Sbjct: 146 ELEL 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,723
Number of Sequences: 5004
Number of extensions: 63188
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)