Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A23
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical pr...    51   1e-06
Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical pr...    51   1e-06

>Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical
           protein M106.3b protein.
          Length = 365

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = +3

Query: 735 REELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDNVGGEISSQIL 869
           + E GF+   NYKT +V   L   AP GID Y+DNVGG IS  ++
Sbjct: 217 KREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNVGGVISDDVI 261



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 506 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXXSLVGQIAKI 679
           LP  +  SPS+ +   G+ G TA  G  +  +                   SL GQIA+I
Sbjct: 138 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 197

Query: 680 KGC-RVIGFAGTDDK 721
           +GC +VIG  G+DDK
Sbjct: 198 EGCSKVIGICGSDDK 212


>Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical
           protein M106.3a protein.
          Length = 373

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = +3

Query: 735 REELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDNVGGEISSQIL 869
           + E GF+   NYKT +V   L   AP GID Y+DNVGG IS  ++
Sbjct: 225 KREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNVGGVISDDVI 269



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 506 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXXSLVGQIAKI 679
           LP  +  SPS+ +   G+ G TA  G  +  +                   SL GQIA+I
Sbjct: 146 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 205

Query: 680 KGC-RVIGFAGTDDK 721
           +GC +VIG  G+DDK
Sbjct: 206 EGCSKVIGICGSDDK 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,322,390
Number of Sequences: 27780
Number of extensions: 362585
Number of successful extensions: 1060
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)