Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_A19
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.29
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.51
06_01_0800 - 5988425-5988580,5988842-5988951,5990275-5990392,599... 30 2.7
12_02_1174 - 26696869-26698191 29 3.6
04_03_0904 + 20717005-20718087 29 4.7
02_04_0400 - 22608519-22608844,22609044-22609122 29 6.2
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.3
09_04_0506 - 18188785-18190599 28 8.3
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 28 8.3
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 33.1 bits (72), Expect = 0.29
Identities = 24/92 (26%), Positives = 25/92 (27%)
Frame = +2
Query: 485 GGGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXPPXTXP 664
GGG P PP G PP P G P P P PP
Sbjct: 268 GGGQVPAAPPPPAGPPPPAPPPLPPSHHHHHGHHPPPPHP-LPPGAGAGAGTGAPPPPPA 326
Query: 665 XXQAXXPXWKXPTPLXTPQKXSPPXXEXPXXP 760
A P P+P PP P P
Sbjct: 327 HPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAP 358
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.3 bits (70), Expect = 0.51
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = +3
Query: 465 PPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTP 596
PP RG GG G PP P PP P GP P G P
Sbjct: 1187 PPPRGH--GGVGGPP-TPPGAPAPPMPPGVPGGPPPPPGGRGLP 1227
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -3
Query: 570 GRAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXAWXG 463
G AP P + G P PG PPP P G
Sbjct: 1096 GVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLG 1131
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +2
Query: 485 GGGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXP 604
G G G P PP PP P G P G + P P
Sbjct: 1191 GHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPP 1230
>06_01_0800 -
5988425-5988580,5988842-5988951,5990275-5990392,
5990649-5990723,5990856-5991030,5991160-5991425
Length = 299
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 516 PPXXPXPPXGXXGPXGPXXXPXXXGT 593
PP P PP G GP G P GT
Sbjct: 8 PPAQPPPPPGAAGPDGAAALPPPPGT 33
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/84 (26%), Positives = 23/84 (27%)
Frame = +2
Query: 509 PGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXPPXTXPXXQAXXPX 688
P PP PP P P K P P R P P Q P
Sbjct: 153 PPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQ---PK 209
Query: 689 WKXPTPLXTPQKXSPPXXEXPXXP 760
+ P L P PP P P
Sbjct: 210 PQPPPTLPPPSPPPPPPTVPPRTP 233
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/84 (22%), Positives = 23/84 (27%)
Frame = +2
Query: 509 PGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXPPXTXPXXQAXXPX 688
P P P T P +P P P PP P + P
Sbjct: 200 PQPKPTPTPYTPTPTPPSYKPQPKPNPPPTYKPQPKPNPPPTYKPAPPTYKPQPKPNPPP 259
Query: 689 WKXPTPLXTPQKXSPPXXEXPXXP 760
P P TP +PP + P
Sbjct: 260 TYKPQPKPTPTPYTPPTYKPQPKP 283
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/61 (29%), Positives = 19/61 (31%)
Frame = -2
Query: 670 GXGSGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHP 491
G G G GG G G G G G G GG G GG +P
Sbjct: 36 GGGGGGGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYP 95
Query: 490 P 488
P
Sbjct: 96 P 96
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/87 (25%), Positives = 23/87 (26%)
Frame = +2
Query: 500 GXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXPPXTXPXXQAX 679
G P PP P T GP P P P PP
Sbjct: 688 GPPPPPPPPLPPANRTNGP--GVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKR 745
Query: 680 XPXWKXPTPLXTPQKXSPPXXEXPXXP 760
P P PL T +K P P P
Sbjct: 746 NPPAPPPPPLMTGKKAPAPPPPPPQAP 772
>09_04_0506 - 18188785-18190599
Length = 604
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = -2
Query: 670 GXGSGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHP 491
G G G GG G G G P GG G G AP P
Sbjct: 312 GRGGGGGGPGGGGGGGGGGNWGRGGGGMGGRGQAGNMRNRMGPVGGRGLMGNGGMVAPPP 371
Query: 490 PXXXP 476
P P
Sbjct: 372 PMLHP 376
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = -3
Query: 612 GXXGXWGSXFXPXXGRAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXA 472
G G G F P + P P G P P PPP A
Sbjct: 20 GGGGGGGGGFSPTAAKPPPPPSPRANGTAAAAKPSASPPPPPPPAAA 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,655
Number of Sequences: 37544
Number of extensions: 179770
Number of successful extensions: 1408
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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