Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_A19
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 33 0.26
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 33 0.26
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 33 0.34
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 32 0.45
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 32 0.45
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 32 0.60
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.79
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 0.79
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 0.79
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 0.79
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.0
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.0
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 31 1.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.0
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 31 1.4
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z70284-9|CAA94280.1| 290|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 30 1.8
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 30 1.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.8
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 3.2
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 3.2
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 29 3.2
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 3.2
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 3.2
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.2
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 29 4.2
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 4.2
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 29 4.2
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 29 4.2
U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helica... 29 4.2
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 4.2
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 4.2
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 29 4.2
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 4.2
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 4.2
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 29 5.6
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 5.6
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 5.6
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 29 5.6
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 29 5.6
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 5.6
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 29 5.6
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 5.6
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 5.6
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 28 7.4
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 28 7.4
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 28 7.4
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 28 7.4
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 28 7.4
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 7.4
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 28 7.4
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 28 7.4
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 28 7.4
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 28 7.4
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 7.4
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 7.4
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 9.7
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 28 9.7
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 28 9.7
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 28 9.7
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 28 9.7
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = -2
Query: 658 GXGGXAGXLAXXXXXGXXXXXGVPFXXGXXX--GPXGPXXPXGGXGXXGGAWXXAPHPPX 485
G G G G G + G GP GP P G G GGA P
Sbjct: 180 GDAGRPGAAGRPGPPGPRGEPGTEYRPGQAGRAGPPGPRGPPGPEGNPGGAGEDGNQGPV 239
Query: 484 XXPRVGGSP 458
P V G P
Sbjct: 240 GHPGVPGRP 248
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = -2
Query: 658 GXGGXAGXLAXXXXXGXXXXXGVPFXXGXXX--GPXGPXXPXGGXGXXGGAWXXAPHPPX 485
G G G G G + G GP GP P G G GGA P
Sbjct: 180 GDAGRPGAAGCPGPPGPRGEPGTEYRPGQAGRAGPPGPRGPPGPEGNPGGAGEDGNQGPV 239
Query: 484 XXPRVGGSP 458
P V G P
Sbjct: 240 GHPGVPGRP 248
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 32.7 bits (71), Expect = 0.34
Identities = 20/49 (40%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Frame = +2
Query: 473 AXGXGGGVXGXXPGPPXGXXPPXGTXG-PXGARP-XXGXKXDPXXPXXP 613
A G GGGV P P G P G G G RP G K P P P
Sbjct: 213 AHGYGGGVGAPGPAGPRGAPGPAGHPGSSGGGRPGPAGPKGAPGQPGRP 261
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 570 GRAPXGPXVPXGGXXPXGGPGXXPXTPPPXP 478
G P GP P GG GGPG PP P
Sbjct: 149 GPGPKGPPGPPGGPGELGGPGRGGNRGPPGP 179
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 465 PPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXG 590
PP GG G P P P G GP G P G
Sbjct: 158 PPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAG 199
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 570 GRAPXGPXVPXGGXXPXGGPGXXPXTPPPXP 478
G P GP P GG GGPG PP P
Sbjct: 149 GPGPKGPPGPPGGPGELGGPGRGGNRGPPGP 179
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 465 PPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXG 590
PP GG G P P P G GP G P G
Sbjct: 158 PPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAG 199
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
G P +G APP P PP G GP GP P G P P
Sbjct: 204 GVPGEKGPTGEPGKVINGAPPGPPGPP-GPPGPQGPPGPPGKDGQPGKAGPP 254
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/88 (26%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Frame = +2
Query: 509 PGPPXGXXPPX--GTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXPPXTXPXXQAXX 682
PGPP PP G GP G G P P P P P +
Sbjct: 158 PGPPGPAGPPGPKGLPGPQGDAGTSGQDGVPGLPGPPGPSGPQGAPGVPGEKGPTGEPGK 217
Query: 683 PXWKXPTPLXTPQKXSPPXXEXPXXPXG 766
P P PP + P P G
Sbjct: 218 VI--NGAPPGPPGPPGPPGPQGPPGPPG 243
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +2
Query: 485 GGGVXGXXPGPPXGXXPPX--GTXGPXGARPXXGXKXDPXXPXXP 613
G + G PGPP PP G GP G G P P P
Sbjct: 216 GKVINGAPPGPPGPPGPPGPQGPPGPPGKDGQPGKAGPPGLPGDP 260
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 31.9 bits (69), Expect = 0.60
Identities = 26/98 (26%), Positives = 30/98 (30%), Gaps = 2/98 (2%)
Frame = +2
Query: 479 GXGGGVXGXXPGPPXGXXPPXGTXGPXG--ARPXXGXKXDPXXPXXPXXXXXXQXXRXPP 652
G G G P P G P G G G +P G P P PP
Sbjct: 192 GEGAGYAEPGPAGPAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAG-------PP 244
Query: 653 XTXPXXQAXXPXWKXPTPLXTPQKXSPPXXEXPXXPXG 766
P A + P+P TP PP + P G
Sbjct: 245 G--PAGPAGEDAYAQPSPAGTPGPPGPPGKDGEAGPDG 280
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.5 bits (68), Expect = 0.79
Identities = 27/100 (27%), Positives = 30/100 (30%)
Frame = +2
Query: 470 HAXGXGGGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXP 649
++ G GG G G G P G GP G+ G P P P
Sbjct: 82 YSTGGAGGGGGGGGGGCDGCCNP-GPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCE 140
Query: 650 PXTXPXXQAXXPXWKXPTPLXTPQKXSPPXXEXPXXPXGN 769
P T P Q P P P P P P GN
Sbjct: 141 PVTQPPCQ--------PCPGGPPGPAGPAGPPGPPGPDGN 172
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXP--PXGXXGPXGPXXXPXXXGTPXXXXXP 614
G P G PP P P P G GP GP P G P P
Sbjct: 126 GAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGP 179
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = -2
Query: 658 GXGGXAGXLAXXXXXGXXXXXGVPFXXGXXX-GPXGPXXPXGGXGXXGGAWXXAPHP--P 488
G G AG G G G GP GP P G G G P P P
Sbjct: 189 GPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGP 248
Query: 487 XXXPRVGGSP 458
P G+P
Sbjct: 249 KGPPGAAGAP 258
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.5 bits (68), Expect = 0.79
Identities = 27/100 (27%), Positives = 30/100 (30%)
Frame = +2
Query: 470 HAXGXGGGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXP 649
++ G GG G G G P G GP G+ G P P P
Sbjct: 82 YSTGGAGGGGGGGGGGCDGCCNP-GPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCE 140
Query: 650 PXTXPXXQAXXPXWKXPTPLXTPQKXSPPXXEXPXXPXGN 769
P T P Q P P P P P P GN
Sbjct: 141 PVTQPPCQ--------PCPGGPPGPAGPAGPPGPPGPDGN 172
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXP--PXGXXGPXGPXXXPXXXGTPXXXXXP 614
G P G PP P P P G GP GP P G P P
Sbjct: 126 GAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGP 179
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = -2
Query: 658 GXGGXAGXLAXXXXXGXXXXXGVPFXXGXXX-GPXGPXXPXGGXGXXGGAWXXAPHP--P 488
G G AG G G G GP GP P G G G P P P
Sbjct: 189 GPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGP 248
Query: 487 XXXPRVGGSP 458
P G+P
Sbjct: 249 KGPPGAAGAP 258
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.5 bits (68), Expect = 0.79
Identities = 27/100 (27%), Positives = 30/100 (30%)
Frame = +2
Query: 470 HAXGXGGGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXP 649
++ G GG G G G P G GP G+ G P P P
Sbjct: 82 YSTGGAGGGGGGGGGGCDGCCNP-GPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCE 140
Query: 650 PXTXPXXQAXXPXWKXPTPLXTPQKXSPPXXEXPXXPXGN 769
P T P Q P P P P P P GN
Sbjct: 141 PVTQPPCQ--------PCPGGPPGPAGPAGPPGPPGPDGN 172
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXP--PXGXXGPXGPXXXPXXXGTPXXXXXP 614
G P G PP P P P G GP GP P G P P
Sbjct: 126 GAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGP 179
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = -2
Query: 658 GXGGXAGXLAXXXXXGXXXXXGVPFXXGXXX-GPXGPXXPXGGXGXXGGAWXXAPHP--P 488
G G AG G G G GP GP P G G G P P P
Sbjct: 189 GPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGP 248
Query: 487 XXXPRVGGSP 458
P G+P
Sbjct: 249 KGPPGAAGAP 258
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.5 bits (68), Expect = 0.79
Identities = 27/100 (27%), Positives = 30/100 (30%)
Frame = +2
Query: 470 HAXGXGGGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXP 649
++ G GG G G G P G GP G+ G P P P
Sbjct: 82 YSTGGAGGGGGGGGGGCDGCCNP-GPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCE 140
Query: 650 PXTXPXXQAXXPXWKXPTPLXTPQKXSPPXXEXPXXPXGN 769
P T P Q P P P P P P GN
Sbjct: 141 PVTQPPCQ--------PCPGGPPGPAGPAGPPGPPGPDGN 172
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXP--PXGXXGPXGPXXXPXXXGTPXXXXXP 614
G P G PP P P P G GP GP P G P P
Sbjct: 126 GAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGP 179
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = -2
Query: 658 GXGGXAGXLAXXXXXGXXXXXGVPFXXGXXX-GPXGPXXPXGGXGXXGGAWXXAPHP--P 488
G G AG G G G GP GP P G G G P P P
Sbjct: 189 GPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGP 248
Query: 487 XXXPRVGGSP 458
P G+P
Sbjct: 249 KGPPGAAGAP 258
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = -3
Query: 615 WGXXGXWGSXFXPXXG-RAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXA 472
+G G G P G R P G P P GPG P PP P A
Sbjct: 325 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 373
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Frame = -3
Query: 603 GXWGSXFXPXXGRAPXGPXVPXGGXXP----XGGPGXXPXTPPPXP 478
G W P GR P P +P P G PG PPP P
Sbjct: 294 GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 488 GGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXP 613
GG+ GPP PP G P P G K P P P
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/67 (26%), Positives = 20/67 (29%)
Frame = +2
Query: 500 GXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXPPXTXPXXQAX 679
G P PP G PP + GP P G P P P PP
Sbjct: 741 GPPPPPPPGGLPPI-SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPV 799
Query: 680 XPXWKXP 700
P + P
Sbjct: 800 IPDYLPP 806
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 488 GGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXP 613
GG+ GPP PP G P P G K P P P
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/67 (26%), Positives = 20/67 (29%)
Frame = +2
Query: 500 GXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXPPXTXPXXQAX 679
G P PP G PP + GP P G P P P PP
Sbjct: 741 GPPPPPPPGGLPPI-SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPV 799
Query: 680 XPXWKXP 700
P + P
Sbjct: 800 IPDYLPP 806
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = -3
Query: 615 WGXXGXWGSXFXPXXG-RAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXA 472
+G G G P G R P G P P GPG P PP P A
Sbjct: 335 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA 383
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Frame = -3
Query: 603 GXWGSXFXPXXGRAPXGPXVPXGGXXP----XGGPGXXPXTPPPXP 478
G W P GR P P +P P G PG PPP P
Sbjct: 304 GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 561 PXGPXVPXGGXXPXGGPGXXPXTPPPXPXAW 469
P GP P P GGPG PP P A+
Sbjct: 414 PGGPGAPGSYGPPQGGPGGFGPPPPGGPGAY 444
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGP 566
G PP +G G GA Q PP PP G G P
Sbjct: 319 GAPPPQGAPQQGFGAPPQGPPQG-GPPQGSFGAPPP 353
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -3
Query: 579 PXXGRAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXAWXG 463
P + P GP P G P G PG PP P G
Sbjct: 153 PDGNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGPGGKPG 191
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPPXXXPRVGGSP 458
GP GP P G G G P P P G P
Sbjct: 161 GPPGPPGPEGPNGEPGNKGPAGPPGPGGKPGPAGPP 196
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 488 GGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXP 613
GG+ GPP PP G P P G K P P P
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/67 (26%), Positives = 20/67 (29%)
Frame = +2
Query: 500 GXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXPPXTXPXXQAX 679
G P PP G PP + GP P G P P P PP
Sbjct: 324 GPPPPPPPGGLPPI-SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPV 382
Query: 680 XPXWKXP 700
P + P
Sbjct: 383 IPDYLPP 389
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPPXXXPRVGGSP 458
GP GP P G G GG P P P G+P
Sbjct: 175 GPAGPPGPPGPDGAPGGGSGPGPAGPAGPPGPDGNP 210
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPPXXXPRVGGSP 458
GP GP P G G GG P P P G+P
Sbjct: 175 GPAGPPGPPGPDGAPGGGSGPGPAGPAGPPGPDGNP 210
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 492 GXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTP 596
G A Q P P P G GP GP P G P
Sbjct: 89 GLPAWCQCEPTKPTCPPGPPGPPGPAGQPGTPGAP 123
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPPXXXPRVGGS 461
G GP P GG G G A P P P G+
Sbjct: 226 GKAGPAGPAGGPGNNGSAGTPGPAGPAGNPGTPGN 260
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -2
Query: 676 SLGXGSGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGG 515
S G G G GG G G G PF P GP GG G
Sbjct: 479 SFGGGGGGGGFGGGGGGFGGGGGGFGSGSPFGGAAPSPPSGPDPDFGGDTAAAG 532
>Z70284-9|CAA94280.1| 290|Caenorhabditis elegans Hypothetical
protein K07F5.11 protein.
Length = 290
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/72 (29%), Positives = 25/72 (34%)
Frame = -2
Query: 673 LGXGSGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPH 494
+G G+G GG G + G G P P G P GG A AP
Sbjct: 51 MGAGAGGGGGGGAQSAYFAVGGAPVGGAPAAV-----PMGAPPPAGGGASTMTALGGAPS 105
Query: 493 PPXXXPRVGGSP 458
VGG+P
Sbjct: 106 GASTMTAVGGAP 117
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -2
Query: 664 GSGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGG 515
G G G G L G G P G P GP P GG G GG
Sbjct: 102 GPGNPGGPGGLGTPGGPGTPGGPGNPGGLGGPGNPGGPGTP-GGPGTPGG 150
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 519 PXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
P P P G GP GP P GTP P
Sbjct: 187 PTGPPGPPGKQGPKGPNGEPGAPGTPGGNALP 218
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -2
Query: 595 GVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHPPXXXPRVGGSP 458
G P G GP GP P G G G + P P P + G+P
Sbjct: 253 GTPGPAGPP-GPPGPIGPPGQPGAPGSS-QPGPQGPPGDPGIDGAP 296
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/90 (26%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Frame = +2
Query: 500 GXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXX------QXXRXPPXTX 661
G P PP G PP P G P P P P Q PP
Sbjct: 270 GSPPPPPTGSPPPP----PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 325
Query: 662 PXXQAXXPXWKXPTPLXTPQKXSPPXXEXP 751
P K P +P SPP P
Sbjct: 326 TGSPPPPPRQKRQAPERSPPTGSPPTGSPP 355
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/90 (26%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Frame = +2
Query: 500 GXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXX------QXXRXPPXTX 661
G P PP G PP P G P P P P Q PP
Sbjct: 291 GSPPPPPTGSPPPP----PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 346
Query: 662 PXXQAXXPXWKXPTPLXTPQKXSPPXXEXP 751
P K P +P SPP P
Sbjct: 347 TGSPPPPPRQKRQAPERSPPTGSPPTGSPP 376
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/90 (26%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Frame = +2
Query: 500 GXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXX------QXXRXPPXTX 661
G P PP G PP P G P P P P Q PP
Sbjct: 276 GSPPPPPTGSPPPP----PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 331
Query: 662 PXXQAXXPXWKXPTPLXTPQKXSPPXXEXP 751
P K P +P SPP P
Sbjct: 332 TGSPPPPPRQKRQAPERSPPTGSPPTGSPP 361
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +3
Query: 465 PPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
PP G A ++PP P PP G G G P G P P
Sbjct: 190 PPGPAGPAGEDAAAPESPPGPPGPP-GPPGKDGEAGAPGAPGGPGTDGAP 238
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPPXXXPRVGGSP 458
GP GP P G G GGA P P G+P
Sbjct: 221 GPPGPPGPGGPPGDAGGAGSDGAPGPQGPPGQDGTP 256
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +2
Query: 488 GGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXP 613
GG PG P PP G GP G G K P P P
Sbjct: 140 GGCIQCPPGRPGPRGPP-GEVGPAGPSGDNGRKGPPGPPGGP 180
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +2
Query: 488 GGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXP 613
GG PG P PP G GP G G K P P P
Sbjct: 140 GGCIQCPPGRPGPRGPP-GEVGPAGPSGDNGRKGPPGPPGGP 180
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPPXXXPRVGGSP 458
GP GP P G G GG + P P G+P
Sbjct: 259 GPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAP 294
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 465 PPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGP 566
PP G GA PP P PP P GP
Sbjct: 259 PPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGGP 292
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPPXXXPRVGGSP 458
GP GP P G G G A P PP P G P
Sbjct: 255 GPPGPPGPPGQDGSGGAAQPGPPGPP-GPPGNDGQP 289
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +2
Query: 479 GXGGGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXP 613
G G P P G P G GP GA G D P P
Sbjct: 169 GSSGQACITCPAGPPGPPGPDGNAGPAGAPGVPGPDGDAGSPPPP 213
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/79 (27%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Frame = +2
Query: 509 PGPPXGXXPPXGTXGPXG--ARPXXGXKXDPXXPXXPXXXXXXQXXRXPP-XTXPXXQAX 679
PGPP G P G GP G P P P P P P ++
Sbjct: 160 PGPP-GPDGPAGPAGPDGEAGSPAAPSPPGPPGPPGPAGPAGNDGAAGTPGPDGPAGEST 218
Query: 680 XPXWKXPTPLXTPQKXSPP 736
P P P P PP
Sbjct: 219 YPEPAGPGPAGPPGPAGPP 237
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +3
Query: 465 PPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
PP G GA A P PP GP GP P G P P
Sbjct: 230 PPGPAGPPGPDGASPTAAPGAAGPP----GPPGPAGAPGPDGNPGTAGPP 275
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXP--PXGXXGPXGPXXXPXXXGTP 596
G P T G PP P P P G GP G P GTP
Sbjct: 126 GTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP 173
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 561 PXGPXVPXGGXXPXGGPGXXPXTPPPXP 478
P GP P G P G PG + PP P
Sbjct: 243 PPGPPGPKGAPGPDGPPGVDGQSGPPGP 270
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 489 GGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTP 596
G G + P P P G GP GP P G P
Sbjct: 240 GPPGPIGEMGPPGPPGPRGEPGPPGPFGPPGDSGEP 275
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Frame = -2
Query: 676 SLGXGSGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAP 497
S+G G+G G G G G+P GP G P G G G P
Sbjct: 207 SIG-GTGIKGPPGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGP 265
Query: 496 H-PPXXXPRVGG 464
PP GG
Sbjct: 266 FGPPGDSGEPGG 277
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXP--PXGXXGPXGPXXXPXXXGTP 596
G P T G PP P P P G GP G P GTP
Sbjct: 121 GTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP 168
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 561 PXGPXVPXGGXXPXGGPGXXPXTPPPXP 478
P GP P G P G PG + PP P
Sbjct: 238 PPGPPGPKGAPGPDGPPGADGQSGPPGP 265
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = -2
Query: 661 SGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGA 512
+G G G G G P G GP GP P G G GGA
Sbjct: 149 AGPAGGPGPKGPPGPPGGHGEPG-PAGRGGPRGPPGPGGPQGEAGEDGGA 197
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPP 488
GP GP P GG G G A P P
Sbjct: 156 GPKGPPGPPGGHGEPGPAGRGGPRGP 181
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 579 PXXGRAPXGPXVPXGGXXPXGGPGXXPXTPPPXP 478
P G P GP P GG G G PP P
Sbjct: 151 PAGGPGPKGPPGPPGGHGEPGPAGRGGPRGPPGP 184
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 489 GGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTP 596
G G + P P P G GP GP P G P
Sbjct: 240 GPPGPIGEMGPPGPPGPRGEPGPPGPFGPPGDSGEP 275
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Frame = -2
Query: 676 SLGXGSGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAP 497
S+G G+G G G G G+P GP G P G G G P
Sbjct: 207 SIG-GTGIKGPPGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGP 265
Query: 496 H-PPXXXPRVGG 464
PP GG
Sbjct: 266 FGPPGDSGEPGG 277
>U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform b
protein.
Length = 265
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 595 GVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHPP 488
G P G GP GP P G G G ++ P PP
Sbjct: 189 GAPGPMGAI-GPIGPPGPKGNPGPDGQSYQGPPGPP 223
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXP--PXGXXGPXGPXXXPXXXGTP 596
G P T G PP P P P G GP G P GTP
Sbjct: 121 GTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP 168
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 561 PXGPXVPXGGXXPXGGPGXXPXTPPPXP 478
P GP P G P G PG + PP P
Sbjct: 238 PPGPPGPKGAPGPDGPPGADGQSGPPGP 265
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -3
Query: 567 RAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXAWXG 463
+AP P P GG P G P PPP P G
Sbjct: 213 QAPPAPPPPIGGIAPVNAHGAPP--PPPLPPVGAG 245
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
G P G G GA P P G GP GP P G P P
Sbjct: 184 GGPGPAGPP-GPAGADGNTPSGGGEGPAGPPGPPGPAGNPGTDGAPGNPGAP 234
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = -3
Query: 579 PXXGRAPXGPXVPXG--GXXPXGGPGXXPXTPPPXP 478
P G P GP P G G P GG G P PP P
Sbjct: 182 PAGGPGPAGPPGPAGADGNTPSGG-GEGPAGPPGPP 216
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -3
Query: 567 RAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXAWXG 463
+AP P P GG P G P PPP P G
Sbjct: 199 QAPPAPPPPIGGIAPVNAHGAPP--PPPLPPVGAG 231
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -3
Query: 567 RAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXAWXG 463
+AP P P GG P G P PPP P G
Sbjct: 199 QAPPAPPPPIGGIAPVNAHGAPP--PPPLPPVGAG 231
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/98 (23%), Positives = 24/98 (24%), Gaps = 1/98 (1%)
Frame = +2
Query: 479 GXGGGVXGXXPGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXPPXT 658
G GG P G P G GP G G P P P + PP
Sbjct: 184 GAPGGPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQPGGPGNPGAPGAVTEVPGQQGPPGP 243
Query: 659 XPXXQAXXPXWK-XPTPLXTPQKXSPPXXEXPXXPXGN 769
P P PP P GN
Sbjct: 244 PGPAGPPGPAGNAGQAGYAQPGPAGPPGDAGPDGAPGN 281
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +3
Query: 465 PPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
PP G GA A P PP GP GP P G P P
Sbjct: 229 PPGPAGPPGPDGASPTAAPGAAGPP----GPPGPAGAPGPDGNPGTAGPP 274
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Frame = +3
Query: 492 GXGAXXQAPPXXPXP----PXGXXGPXGPXXXPXXXGTPXXXXXP 614
G GA P P P P G GP GP P G P P
Sbjct: 147 GKGAAAPCEPSTPPPCQPCPAGPPGPPGPDGTPGEPGGPGPAGSP 191
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/89 (25%), Positives = 24/89 (26%), Gaps = 2/89 (2%)
Frame = +2
Query: 509 PGPPX--GXXPPXGTXGPXGARPXXGXKXDPXXPXXPXXXXXXQXXRXPPXTXPXXQAXX 682
PG P G P G GP G G P P P P P Q
Sbjct: 157 PGAPAHGGGQGPPGPPGPAGDAGSPGQAGAPGNPGRPGQSGQRSRGLPGPSGRPGPQGPP 216
Query: 683 PXWKXPTPLXTPQKXSPPXXEXPXXPXGN 769
P TP PP P G+
Sbjct: 217 GAPGQPGSGSTPGPAGPPGPPGPNGQPGH 245
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Frame = +3
Query: 453 RVGDPPTRGXXXGGXGAXXQAP--PXXPXP----PXGXXGPXGPXXXPXXXGTPXXXXXP 614
R G P G G G Q P P P P P G GP GP P G P P
Sbjct: 116 RPGKPGAPGLP-GNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLP 174
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 513 APPXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
+PP P P GP GP P G P P
Sbjct: 59 SPPPAPRPSGQPPGPQGPSDLPGPSGAPPGPPHP 92
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +3
Query: 456 VGDPPTRGXXX--GGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
VG P +G G G Q P P G GP GP P G P P
Sbjct: 171 VGMPGEQGVTGAPGDKGPAGQPGRNGPDGPNGEPGPKGPPGQPGADGQPGMPGEP 225
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPP 488
GP GP P G G G ++ P PP
Sbjct: 262 GPIGPPGPKGNPGPDGQSYQGPPGPP 287
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Frame = +3
Query: 453 RVGDPPTRGXXXGGXGAXXQAP--PXXPXP----PXGXXGPXGPXXXPXXXGTPXXXXXP 614
R G P G G G Q P P P P P G GP GP P G P P
Sbjct: 116 RPGKPGAPGLP-GNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGPPGDSGEPGSPGLP 174
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPP 488
GP GP P G G G ++ P PP
Sbjct: 262 GPIGPPGPKGNPGPDGQSYQGPPGPP 287
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/60 (35%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Frame = +3
Query: 453 RVGDPPTRGXXXGGXGAXXQAP--PXXPXP----PXGXXGPXGPXXXPXXXGTPXXXXXP 614
R G P G G G Q P P P P P G GP GP P G P P
Sbjct: 116 RPGKPGAPGLP-GNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLP 174
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 509 PGPPXGXXPPXGTXGPXGARPXXGXKXDPXXP 604
PGPP G PP G G G + G +P P
Sbjct: 269 PGPP-GYTPPPGPPGTPGVQGEAGQDGEPGVP 299
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 519 PXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
P P P G GP GP P G P P
Sbjct: 185 PQGPQGPPGAVGPCGPSGIPGLPGNPGYTSPP 216
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/64 (32%), Positives = 22/64 (34%)
Frame = -2
Query: 658 GXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHPPXXX 479
G G AG G G P G GP GP P G G G A AP P
Sbjct: 139 GLPGPAGAPGQPGPKGPNGNPGAP-AQGGGQGPPGPPGPAGSAGSPGQA--GAPGNPGSP 195
Query: 478 PRVG 467
+ G
Sbjct: 196 GKSG 199
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/64 (32%), Positives = 22/64 (34%)
Frame = -2
Query: 658 GXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHPPXXX 479
G G AG G G P G GP GP P G G G A AP P
Sbjct: 139 GLPGPAGVPGQPGPKGPNGNPGAP-AQGGGQGPPGPPGPAGSAGSPGQA--GAPGNPGSP 195
Query: 478 PRVG 467
+ G
Sbjct: 196 GKSG 199
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 579 PXXGRAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXAWXG 463
P AP P P P G G P PPP P G
Sbjct: 624 PISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 662
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 465 PPTRGXXXGGXGAXXQAPPXXPXPPXGXXGP 557
PP G G GA PP P PP G GP
Sbjct: 636 PPPMGLPAVGAGAP---PPPPPPPPSGAGGP 663
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 579 PXXGRAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXAWXG 463
P AP P P P G G P PPP P G
Sbjct: 450 PISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 488
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 465 PPTRGXXXGGXGAXXQAPPXXPXPPXGXXGP 557
PP G G GA PP P PP G GP
Sbjct: 462 PPPMGLPAVGAGAP---PPPPPPPPSGAGGP 489
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = -2
Query: 661 SGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHPPXX 482
+G G G G P GP GP P G G G P P
Sbjct: 201 AGQDGHPGNAGAPGAPGKVNEVPGPAGAPGAPGPDGPAGPAGSPGAPGNPGSQGPQGPAG 260
Query: 481 XPRVGGSP 458
GSP
Sbjct: 261 DNGGAGSP 268
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = -2
Query: 661 SGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHPPXX 482
+G G G G P GP GP P G G G P P
Sbjct: 263 AGQDGHPGNAGAPGAPGKVNEVPGPAGAPGAPGPDGPAGPAGSPGAPGNPGSQGPQGPAG 322
Query: 481 XPRVGGSP 458
GSP
Sbjct: 323 DNGGAGSP 330
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 489 GGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTP 596
G G A P P P G G GP P G+P
Sbjct: 220 GAPGEAGDAGPAGPPGPPGAPGNDGPPGPPGPKGSP 255
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXP--PXGXXGPXGPXXXPXXXGTP 596
G P G PP P P P G GP G P GTP
Sbjct: 128 GQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP 175
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = -2
Query: 661 SGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHPPXX 482
+G G G G P GP GP P G G G P P
Sbjct: 200 AGQDGHPGNAGAPGAPGKVNEVPGPAGAPGAPGPDGPAGPAGSPGAPGNPGSQGPQGPAG 259
Query: 481 XPRVGGSP 458
GSP
Sbjct: 260 DNGGAGSP 267
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = -2
Query: 661 SGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHPPXX 482
+G G G G P GP GP P G G G P P
Sbjct: 200 AGQDGHPGNAGAPGAPGKVNEVPGPAGAPGAPGPDGPAGPAGSPGAPGNPGSQGPQGPAG 259
Query: 481 XPRVGGSP 458
GSP
Sbjct: 260 DNGGAGSP 267
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = -2
Query: 661 SGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHPPXX 482
+G G G G P GP GP P G G G P P
Sbjct: 201 AGQDGHPGNAGAPGAPGKVNEVPGPAGAPGAPGPDGPAGPAGSPGAPGNPGSQGPQGPAG 260
Query: 481 XPRVGGSP 458
GSP
Sbjct: 261 DNGGAGSP 268
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = -2
Query: 661 SGXGGXAGXLAXXXXXGXXXXXGVPFXXGXXXGPXGPXXPXGGXGXXGGAWXXAPHPPXX 482
+G G G G P GP GP P G G G P P
Sbjct: 201 AGQDGHPGNAGAPGAPGKVNEVPGPAGAPGAPGPDGPAGPAGSPGAPGNPGSQGPQGPAG 260
Query: 481 XPRVGGSP 458
GSP
Sbjct: 261 DNGGAGSP 268
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
G+P G G G ++ P P P G GP GP P G P P
Sbjct: 198 GNPGAPGSP-GKPGEDGKSEPITPGAP-GPAGPPGPQGPPGAPGQPGHDGQP 247
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 489 GGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTP 596
G G A P P P G G GP P G+P
Sbjct: 220 GAPGEAGDAGPAGPPGPPGAPGNDGPPGPPGPKGSP 255
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXP--PXGXXGPXGPXXXPXXXGTP 596
G P G PP P P P G GP G P GTP
Sbjct: 128 GQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTP 175
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 509 PGPPXGXXPPXGTXGPXGARPXXGXKXDPXXPXXP 613
PGPP G P GT GP G + P P P
Sbjct: 210 PGPP-GPKGPRGTPGPTGPKNFYITSGPPGPPGPP 243
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = -3
Query: 579 PXXGRAPXGPXVPXGGXXPXGGPGXXPXTPPPXPXAWXG 463
P + P GP P G P G G PP P G
Sbjct: 151 PQGNKGPLGPPGPPGPEGPNGTAGNKGPAGPPGPGGKPG 189
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -2
Query: 565 GPXGPXXPXGGXGXXGGAWXXAPHPPXXXPRVGGSP 458
GP GP P G G G P P P G P
Sbjct: 159 GPPGPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGPP 194
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/52 (30%), Positives = 18/52 (34%)
Frame = +3
Query: 459 GDPPTRGXXXGGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTPXXXXXP 614
G+P +G Q P P P G GP GP GTP P
Sbjct: 150 GNPGPKGPPGQPGAPGEQGPNGRPGAP-GAPGPQGPPGTAGNDGTPGQPGAP 200
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = +1
Query: 535 PRGDXGAXG--GPXXXRXEXGPPXPXXTPXPXXXPKXPP 645
P GD G G G E GPP P P P PP
Sbjct: 160 PAGDGGRDGADGVDGTPGEIGPPGPPAPPGPDPHSLFPP 198
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = +1
Query: 535 PRGDXGAXG--GPXXXRXEXGPPXPXXTPXPXXXPKXPP 645
P GD G G G E GPP P P P PP
Sbjct: 141 PAGDGGRDGADGVDGTPGEIGPPGPPAPPGPDPHSLFPP 179
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 489 GGXGAXXQAPPXXPXPPXGXXGPXGPXXXPXXXGTP 596
G G Q+ P P P G G GP P G P
Sbjct: 229 GRDGQPGQSGPPGPPGPPGNVGEAGPPGKPGQPGLP 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,507,497
Number of Sequences: 27780
Number of extensions: 126371
Number of successful extensions: 3588
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2742
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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