Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A18
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    29   1.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.7  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    27   4.7  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   8.3  

>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +1

Query: 460 ASSHFDRNVVPYARWVGFAAMVVFCLAAVIFPMGFHVDEIGGQPYQLPNSHQVGISYILF 639
           ++S+   N  P A+ +G      F    V       +D I G   +L +SH     Y++ 
Sbjct: 246 SNSYLRYNRDPIAKLIGLVE-AYFSPDTVDDEFTLAIDAINGS--RLKHSHYKQYHYVVQ 302

Query: 640 VLSLWITVISELFA 681
            L LW+ ++ E+F+
Sbjct: 303 SLHLWLLIMGEIFS 316


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 172 KIIIFDYKKNSLDINVY*QQY*LIHNYN 89
           KII FD+KKN  ++N Y + Y L ++Y+
Sbjct: 666 KIIYFDWKKNRWEVN-YDEMYTLDNDYS 692


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 17  DLHYRESLRFASISYPFTHNFSI-EIIIMNKSILLSIYINI*RIFLVI 157
           D H R  L  +   +      S+  ++ M KS+L+S Y N+  +F+ I
Sbjct: 24  DRHERAPLLGSEYDHSMARQLSLLNVVGMTKSVLMSSYFNLMLVFVPI 71


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +2

Query: 503 GLVLQQW-LYSA*RQSYFPWVSMWMRLEDNLINYQTVIKLES 625
           G++   W +    +  Y PW   W+ L  N ++     K ES
Sbjct: 23  GIIRSGWVMLKEDKMKYLPWTKKWLVLSSNSLSIYKGSKSES 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,219
Number of Sequences: 5004
Number of extensions: 75682
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)