Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A18
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   4.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   4.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   4.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   4.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.6  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 588 LSSNLIHMETHGKYDCR*AEYNHCCK 511
           LS+  IH   + KY+     YN+ CK
Sbjct: 85  LSNRTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 588 LSSNLIHMETHGKYDCR*AEYNHCCK 511
           LS+  IH   + KY+     YN+ CK
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 588 LSSNLIHMETHGKYDCR*AEYNHCCK 511
           LS+  IH   + KY+     YN+ CK
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 588 LSSNLIHMETHGKYDCR*AEYNHCCK 511
           LS+  IH   + KY+     YN+ CK
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 220 VISATLFMAADVFAIVSLAMPDWIITDIGGDTRLGLMW 333
           +I       A  + + SLA+ D I+  +G    L L W
Sbjct: 65  IIKNPAMQTATNYYLFSLAISDLILLVLGLPNELSLFW 102


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 329 IRPRRVSPPMSVIIQSGIARLTMAKT 252
           +RPR +SP   V I + +  L +  T
Sbjct: 617 VRPRYISPASQVCIAAALIALQIVLT 642


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 329 IRPRRVSPPMSVIIQSGIARLTMAKT 252
           +RPR +SP   V I + +  L +  T
Sbjct: 707 VRPRYISPASQVCIAAALIALQIVLT 732


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,493
Number of Sequences: 438
Number of extensions: 5306
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)