Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A16
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          192   4e-49
11_01_0155 - 1287003-1287452                                          192   4e-49
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    32   0.54 
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849...    29   5.0  
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629...    29   6.6  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  192 bits (467), Expect = 4e-49
 Identities = 83/131 (63%), Positives = 109/131 (83%)
 Frame = +1

Query: 121 RKPPPQLAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGG 300
           +K    ++YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F  +D+R+ V+GG
Sbjct: 19  KKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGG 78

Query: 301 GHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGP 480
           G  +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG 
Sbjct: 79  GKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGR 138

Query: 481 GARARYQKSYR 513
           GARAR+QKSYR
Sbjct: 139 GARARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  192 bits (467), Expect = 4e-49
 Identities = 83/131 (63%), Positives = 109/131 (83%)
 Frame = +1

Query: 121 RKPPPQLAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGG 300
           +K    ++YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F  +D+R+ V+GG
Sbjct: 19  KKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGG 78

Query: 301 GHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGP 480
           G  +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG 
Sbjct: 79  GKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGR 138

Query: 481 GARARYQKSYR 513
           GARAR+QKSYR
Sbjct: 139 GARARFQKSYR 149


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 23/65 (35%), Positives = 30/65 (46%)
 Frame = +1

Query: 157 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQA 336
           G G   VN +  D   P +L ++          +     D+  TVKGGG   QV AIR  
Sbjct: 309 GDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVKGGGVSGQVGAIRLG 367

Query: 337 ISKAL 351
           IS+AL
Sbjct: 368 ISRAL 372


>08_02_0526 +
           18184146-18184168,18184247-18184438,18184846-18184954,
           18185071-18185220,18185973-18186136,18186273-18186359,
           18187083-18187137,18187911-18188333
          Length = 400

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
 Frame = +1

Query: 76  RQDVSPSRPSKYSDVRKPPPQLAYCKRG-----HGMLRVNGRPLDLVEP 207
           R+  S S P K SD R PPP+     R      HG  R   R  DL  P
Sbjct: 33  RRSTSRSPPPKKSDSRSPPPRRRSTSRSPRPRRHGRSRSRSRDDDLRNP 81


>06_02_0131 +
           12161268-12161781,12162123-12162867,12162950-12162986,
           12163083-12163216,12163298-12163625
          Length = 585

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 288 CHSDV--NHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRKL 136
           CH  +  +  E+F A +  R + F+  +SGL   Q  P   +H M+T A  K+
Sbjct: 365 CHQVILASRSEYFKA-RLSRNMDFLEVKSGLQSTQSLPFLEEHDMSTEAFEKV 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,787,550
Number of Sequences: 37544
Number of extensions: 427699
Number of successful extensions: 1187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)