Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A16
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   200   1e-51
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    29   4.5  
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    29   4.5  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  200 bits (488), Expect = 1e-51
 Identities = 87/131 (66%), Positives = 113/131 (86%)
 Frame = +1

Query: 121 RKPPPQLAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGG 300
           +K    +A+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  VDIR+ V GG
Sbjct: 14  KKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGG 73

Query: 301 GHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGP 480
           GHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADPRR E KKFGGP
Sbjct: 74  GHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGP 133

Query: 481 GARARYQKSYR 513
           GARARYQKSYR
Sbjct: 134 GARARYQKSYR 144



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 93  IQAVQVFGRKKTATA 137
           +Q+VQ FGRKKTATA
Sbjct: 5   VQSVQTFGRKKTATA 19


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 370 YVDEASKKEIKDILVQYDRSLLVADPRRCE 459
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -2

Query: 309 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRKL 136
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A  +L
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAEL 205


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -2

Query: 309 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRKL 136
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A  +L
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAEL 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,849
Number of Sequences: 27780
Number of extensions: 324563
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)