Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A14
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0029 - 8319233-8319408,8319516-8319584,8319754-8319838,832...    28   8.8  

>10_05_0029 -
           8319233-8319408,8319516-8319584,8319754-8319838,
           8320112-8320225
          Length = 147

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +2

Query: 326 IIGIPPPDVPVNDESQPKSREYPHKQRIRNLRRLIAEG 439
           I+ + PP  P+ ++  P+   +P+++R+R L+ ++  G
Sbjct: 7   ILNLNPPTSPLPEQQSPQGFCHPNRRRLRFLQGILRYG 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,669,052
Number of Sequences: 37544
Number of extensions: 262409
Number of successful extensions: 621
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)