Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A13
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    78   2e-15
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    27   4.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   5.6  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    26   5.6  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   7.4  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.4  

>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 4/174 (2%)
 Frame = +3

Query: 279 LANIRDNPGSKITQKR-GRGQHGG--DKHGAGNKGSGQRQNY-MRLGYETGNNPFYLRIP 446
           + N  +N  +  ++KR GRG   G     G G+KGSGQR+   ++ G+E G  P     P
Sbjct: 1   MLNDLNNSANYQSKKRVGRGPASGLGKTSGRGHKGSGQRRGRRIKPGFEGGQTPITKLFP 60

Query: 447 HENYYRGHHLKREYPPMTLLELQKLIDRNRVDISKPIDIASLIKSGLYTLNPDQKHFGVN 626
              +  GH LK+    + L  +Q+ IDR R+D SK I +  L+ S         KH GV 
Sbjct: 61  KVGHSTGH-LKKPLR-LGLGRVQEWIDRGRLDASKTITMKDLLDSRCCR---GIKH-GVE 114

Query: 627 LTDDGADIFAAKINIEVQWASEQVIAAIEKNGGVITTAYYDPHSLFILKNPQRF 788
           LT D   +    I+IEV  A+ Q I  I+  GG ITT Y+ P +L    +P  F
Sbjct: 115 LTADEPGLLKTAISIEVSKATVQAIQQIKNAGGSITTVYFSPLALRAHLHPSSF 168


>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 492 PMTLLELQKLIDRNRVDISKPIDIASLIK 578
           P  L+   +LID+NR DI+K    A+LI+
Sbjct: 148 PKFLIMFPELIDKNREDIAKAAAEAALIE 176


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +3

Query: 297  NPGSKITQKRGRGQHGGDKHGAGNKGSGQRQNYMRLGYE 413
            N G  I        H    H  G+KG   R NYM + YE
Sbjct: 1720 NYGFSIIDIVKHNPHSITIHFGGSKGKKIRDNYMAMAYE 1758


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 465 GHHLKREYPPMTLLELQKLIDRNRVDISKPIDIASLIKSGL 587
           GH++ ++Y P+ L E + L  +N+   S    +  L KS L
Sbjct: 51  GHYVSKDYQPINLSEWKNLTSQNQGAYSLDALVDFLAKSPL 91


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 661 FAAKMSAPSSVKLTPKCFWSGFNVY 587
           F  K+S  SS+ L    FWS FN+Y
Sbjct: 154 FYQKLSLDSSLILALNNFWSFFNLY 178


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 655 LQKLI*KYSGQVNKLLQRLRKMVVLLLQPTMILTVYLY 768
           LQ LI KYS    +L++      +  +Q  +IL++Y Y
Sbjct: 290 LQSLIKKYSFYSERLVKSADNFTIESIQCLLILSIYRY 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,567
Number of Sequences: 5004
Number of extensions: 63483
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)