Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_A13
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0139 + 13065468-13065902,13067196-13067279,13068221-13068499 50 2e-06
03_02_0190 + 6263032-6263449,6263616-6263767,6264754-6264975 37 0.017
12_01_0702 - 6006553-6007350,6010743-6011270 25 1.1
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 31 1.5
02_05_0432 + 28936293-28936796,28937382-28939250 31 1.5
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 30 1.9
02_01_0251 - 1652356-1652522,1652564-1652608,1652658-1652733,165... 30 2.6
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664 29 3.4
04_03_0568 + 17223924-17224190 29 4.5
04_04_1173 + 31469357-31469920 28 7.8
03_03_0215 - 15492934-15493023,15493449-15493547,15493578-154936... 28 7.8
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410 28 7.8
01_06_1755 - 39673030-39673338 28 7.8
>08_02_0139 + 13065468-13065902,13067196-13067279,13068221-13068499
Length = 265
Score = 50.4 bits (115), Expect = 2e-06
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = +3
Query: 273 ITLANIRDNPGS-KITQKRGRGQHGGDKHGAGNKGSGQR-QNYMRLGYETGNNPFYLRIP 446
+ L ++RDNPG+ K ++GRG G AG GQ+ + R G+E G P R+P
Sbjct: 73 LRLNDLRDNPGARKQKTRKGRGIGSGKGKTAGRGHKGQKARGTARFGFEGGQTPLRRRLP 132
Query: 447 HENYYRGHHLKREYPPMTLLELQKLIDRNRVDISKPIDIASL 572
+ L + P L ++ KLI+ ++D S+ I + +L
Sbjct: 133 RRGFKNRFSL--TFQPCGLGKIAKLINAGKIDSSELITMKTL 172
>03_02_0190 + 6263032-6263449,6263616-6263767,6264754-6264975
Length = 263
Score = 37.1 bits (82), Expect = 0.017
Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 6/157 (3%)
Frame = +3
Query: 270 RITLANIRDNPGSKITQKR-GRGQHGGDKHGAGNKGSGQRQNY---MRLGYETGNNPFYL 437
+ L N+ GS+ KR GRG G G GQ+ +R G+E G P Y
Sbjct: 70 KFRLDNLGPQKGSRRRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRRGFEGGQMPLYR 129
Query: 438 RIPH-ENYYRGHHL-KREYPPMTLLELQKLIDRNRVDISKPIDIASLIKSGLYTLNPDQK 611
RIP G H+ +Y P L +L R I + SL GL + ++
Sbjct: 130 RIPKLRGIAGGMHIGLPKYVPFNLRDLA----RGGFKDGDEISLESLKSRGLINPSGRER 185
Query: 612 HFGVNLTDDGADIFAAKINIEVQWASEQVIAAIEKNG 722
+ + DG D+ + K+NI+ S +E G
Sbjct: 186 KLPLKILGDG-DV-SVKLNIKAGAFSASAKEKLEAAG 220
>12_01_0702 - 6006553-6007350,6010743-6011270
Length = 441
Score = 25.0 bits (52), Expect(2) = 1.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 363 GNKGSGQRQNYMRLGYETGNNPFYLRIPHENY 458
G +G Q M G PFY +IPH+ +
Sbjct: 187 GVEGFVQELRTMSFAIGFGTAPFYAQIPHDRH 218
Score = 24.6 bits (51), Expect(2) = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 321 KRGRGQHGGDKHGAGNKGSGQR 386
+ GRG GG G GN +G+R
Sbjct: 151 RAGRGGGGGGDAGGGNGAAGRR 172
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 285 NIRDNPGSKITQKRGRGQHGGDKHGAGNKGSGQRQNYMRLGYETGNNPFYLRIP 446
N R N G +RG+ HGG +G G+R + + G++P Y+R P
Sbjct: 185 NRRGNGGGGGGGRRGQEHHGG--FDGQRRGGGRRDGHGPGHQQRGHHPSYIRAP 236
>02_05_0432 + 28936293-28936796,28937382-28939250
Length = 790
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -1
Query: 507 PKVS*EDTLFSNGVLYSNSHEEYEDKMGCFQFHNLVSYNFDVVQNLY 367
P++S ++LF V + +Y K F +HN+V+ N DV +++Y
Sbjct: 255 PRLSLHNSLFRALVSKTGGTAKYNLKQAEFVYHNVVTTNLDVHKDVY 301
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +3
Query: 303 GSKITQKRGRGQHGGDKHGAGNKGSGQRQNYMRLGYETGNNPFYLRIPHENYYRGHHLKR 482
G++ Q R GD++ G+G RQN ++ GN RI H G +
Sbjct: 500 GNRYNQNGNRYHQNGDEYYQNGNGNGHRQNGSGYYHQNGNGYRQDRIFHNGNGNGRPARF 559
Query: 483 EYPPMT 500
P T
Sbjct: 560 NGPRQT 565
>02_01_0251 -
1652356-1652522,1652564-1652608,1652658-1652733,
1652976-1653041,1653120-1653238,1653334-1653508,
1653604-1653881,1654253-1654436,1654455-1654550,
1654872-1655012,1655091-1655123
Length = 459
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 324 RGRGQHGGDKHGAGNKGSGQRQN-YMRL 404
RG + GGD AGN+GSG+ N Y R+
Sbjct: 417 RGYARGGGDNEYAGNRGSGRPSNGYQRV 444
>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
Length = 582
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 330 RGQHGGDKHGAGNKGSGQRQNYMRLGYETGNNPFYLRIPHENYYRGHHLKREYPPMTLLE 509
R HGGD G G GSG ++ + ++ L++ H ++G +E PP+ +
Sbjct: 47 RVTHGGDGGGVGGGGSGGQEEADEQQQQQHDHHRLLQLHH---HQGVQQDQEPPPVPVFH 103
Query: 510 LQ 515
LQ
Sbjct: 104 LQ 105
>04_03_0568 + 17223924-17224190
Length = 88
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 333 GQHGGDKHGAGNKGSGQRQNYMRLGYETGNNPFYLRIPHENYYRGHHLK 479
G+HGGD G G++ SGQR + T +I E Y+ HLK
Sbjct: 2 GRHGGDGSGVGDE-SGQRIQRLERATMTAVAAAVSQICFEFYFVNVHLK 49
>04_04_1173 + 31469357-31469920
Length = 187
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 315 TQKRGRGQHGGDKHGAGNKGSG 380
T + G G+HGG++ G +G G
Sbjct: 92 TSRHGGGEHGGEEEEGGRRGGG 113
>03_03_0215 -
15492934-15493023,15493449-15493547,15493578-15493634,
15493635-15493902,15494019-15494086
Length = 193
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 300 PGSKITQKRGRGQHGGDKHGAGNKGSG 380
P + T G G HG D G KGSG
Sbjct: 27 PRATTTDGSGAGDHGSDSGGNSGKGSG 53
>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
Length = 1044
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 477 SNGVLYSNSHEEYEDKMGCFQFHNLVSYNFDVVQNLYCLHHVCHPRV 337
+NG L S H + D G +S FD+ L LH+ C P V
Sbjct: 854 ANGSLESRLHTRF-DPCGDLSLGERISIAFDIASALEYLHNQCIPPV 899
>01_06_1755 - 39673030-39673338
Length = 102
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 KRGRGQHGGDKHGAGNKG-SGQRQNYMRLGYETGNNPFYLRIPHENYYRGHHLKREYPPM 497
+ GRG H G+ G G+ G SG R LG G+ +L + + + GH R+Y
Sbjct: 41 RAGRGHHHGNGGGGGHLGYSGSRHGDAHLG---GHREEHL-VHGDEHRHGHGGGRQYDSC 96
Query: 498 T 500
T
Sbjct: 97 T 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,874
Number of Sequences: 37544
Number of extensions: 372712
Number of successful extensions: 1381
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -