Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A13
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.85 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.6  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   4.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.9  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 414 TGNNPFYLRIPHENYYRGHHLK 479
           TG  PF     H+ + R HHLK
Sbjct: 5   TGEKPFECPECHKRFTRDHHLK 26


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 663 FLQQKCQLHHQLN*HQNAFGQDSMCITQILSSWQYQW 553
           +LQQ+ Q HHQ +  ++A  Q+       L   Q+Q+
Sbjct: 98  YLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQF 134


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 631 VKLTPKCFW--SGFNVYNPDFIKLAISMGLDM 542
           +K+   C++  SG  +  PD   L + MGL M
Sbjct: 317 IKILGDCYYCISGAPIERPDHAVLCVYMGLSM 348


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 465 LYSNSHEEYEDKMGCFQ 415
           +Y ++ EE   K+GCF+
Sbjct: 40  MYESNSEEQMKKLGCFE 56


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 492 PMTLLELQKLIDRNRVDISKPIDIA 566
           P T LE+QK I + + D+ + I  A
Sbjct: 157 PQTYLEIQKXIKKAKEDVIEVIQKA 181


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 752 RIIVGCSNNTTIFLNRCNNLFTCPLYFYINF 660
           +II   SN T    N  NN     LY+ IN+
Sbjct: 302 KIISSLSNKTIHNNNNYNNYNNKKLYYNINY 332


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 520 NFCNSKSVIGGYSLFK 473
           ++CNSK+  G YS  K
Sbjct: 217 DYCNSKTNTGEYSCLK 232


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 520 NFCNSKSVIGGYSLFK 473
           ++CNSK+  G YS  K
Sbjct: 217 DYCNSKTNTGEYSCLK 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,881
Number of Sequences: 438
Number of extensions: 4440
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)