Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_A12
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 30 2.2
02_05_0312 - 27792127-27792360,27793282-27793412,27793534-27793837 30 2.9
01_06_0093 + 26385471-26385740,26385842-26385934,26386526-263865... 29 5.1
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 6.7
02_02_0280 - 8515894-8517309 29 6.7
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278... 28 8.9
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 28 8.9
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 449 SMSQDQGKIQHQVDEEALSNEDVEPAPVYDFRAIEETAPRDKCLYSS-FFEPP--LHQSA 619
S+ + +GK++HQ +E A S+ + + YD + ++E ++K + + F PP H+S
Sbjct: 3028 SLLELEGKVRHQCEELAGSSSEEDG---YDQKLLQELKTKEKSIRAKVVFRPPQSRHKSL 3084
Query: 620 EEYCANRDMQRLRRC 664
C + +RL C
Sbjct: 3085 IVACCEFE-ERLSEC 3098
>02_05_0312 - 27792127-27792360,27793282-27793412,27793534-27793837
Length = 222
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 632 ANRDMQRLRRCXVDLFLGTLGLLNVDEVFSVSD 730
A+ D L C VD LG LGL ++ ++F SD
Sbjct: 98 AHSDGDVLLHCVVDAILGALGLPDIGQIFPDSD 130
>01_06_0093 +
26385471-26385740,26385842-26385934,26386526-26386591,
26386872-26387012,26387465-26387692,26387808-26387925,
26387993-26388132,26388259-26388426,26388520-26388675,
26388773-26389138
Length = 581
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 539 FRAIEETAPRDKCLYSSFFEPPLHQSAEEYCA 634
F +++ AP ++ L S+FF P+H SA E CA
Sbjct: 526 FVTVDKNAPVNQDLISNFFSDPVH-SAIEVCA 556
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 28.7 bits (61), Expect = 6.7
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Frame = +2
Query: 362 LERTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQGK---IQHQVDEEALSNEDVEPAPV 532
L+ G+P D+ GWR + +++ D+ + + QV D P +
Sbjct: 629 LQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPI-L 687
Query: 533 YDFRAIEETAPRDKCLYSSFF---EPPLHQSAEEYCAN 637
+F + T PR KCL+ EP Q EE N
Sbjct: 688 LEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAWIN 725
>02_02_0280 - 8515894-8517309
Length = 471
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 221 STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDG 352
+ + +KT++ ++ G+G + R KN T + SGG G
Sbjct: 379 AAMAQKTSDTIAQAGHGAGEAKNRAAESGKNSSATTTIGSGGGG 422
>08_01_1011 +
10226160-10226676,10226794-10226810,10227677-10227886,
10227921-10228406
Length = 409
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 368 RTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNED 514
+T+L I + D D+ D +SE + +D + ++DE++LS+ED
Sbjct: 243 KTSLGQIAYSEWDEDE-IDEDPLNSEDEIDEDPLNSEDEIDEDSLSSED 290
>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 79 ILQTGCHKVAEEQKLEESDGL 141
+ Q+GCH EE ++E DGL
Sbjct: 1872 LYQSGCHTALEELRIESCDGL 1892
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,491,279
Number of Sequences: 37544
Number of extensions: 473918
Number of successful extensions: 1459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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