Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A12
         (907 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D88213-1|BAA19001.1|  729|Homo sapiens retina-specific amine oxi...    35   0.47 
DQ060035-1|AAY43129.1|  756|Homo sapiens amine oxidase, copper c...    35   0.47 
BC142641-1|AAI42642.1|  756|Homo sapiens amine oxidase, copper c...    35   0.47 
AF081363-1|AAD39345.1|  756|Homo sapiens retina copper-containin...    35   0.47 
AB012943-2|BAA32590.1|  756|Homo sapiens retina-specific amine o...    35   0.47 
AB012943-1|BAA32589.1|  729|Homo sapiens retina-specific amine o...    35   0.47 
BC064608-1|AAH64608.1|  311|Homo sapiens mediator complex subuni...    31   5.7  
AL713892-2|CAI17283.2|  311|Homo sapiens cofactor required for S...    31   5.7  
AL603649-2|CAH72529.2|  311|Homo sapiens cofactor required for S...    31   5.7  
AL513102-2|CAH72546.2|  311|Homo sapiens cofactor required for S...    31   5.7  
AL160271-7|CAI13386.2|  311|Homo sapiens cofactor required for S...    31   5.7  

>D88213-1|BAA19001.1|  729|Homo sapiens retina-specific amine
           oxidase protein.
          Length = 729

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 494 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 366
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>DQ060035-1|AAY43129.1|  756|Homo sapiens amine oxidase, copper
           containing 2 (retina-specific) protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 494 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 366
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>BC142641-1|AAI42642.1|  756|Homo sapiens amine oxidase, copper
           containing 2 (retina-specific) protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 494 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 366
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>AF081363-1|AAD39345.1|  756|Homo sapiens retina copper-containing
           monoamine oxidase protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 494 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 366
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>AB012943-2|BAA32590.1|  756|Homo sapiens retina-specific amine
           oxidase protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 494 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 366
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>AB012943-1|BAA32589.1|  729|Homo sapiens retina-specific amine
           oxidase protein.
          Length = 729

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 494 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 366
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>BC064608-1|AAH64608.1|  311|Homo sapiens mediator complex subunit
           27 protein.
          Length = 311

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 738 VLLRINSLVAEFQVSLSRPNG-DACTVETTGSADAIVTITRDEIFTEETI 884
           V+ RI+ +  E  + LSRPNG  A  + T G    ++ + R  +F + TI
Sbjct: 165 VISRIDRMFPEMSIHLSRPNGTSAMLLVTLGKVLKVIVVMR-SLFIDRTI 213


>AL713892-2|CAI17283.2|  311|Homo sapiens cofactor required for Sp1
           transcriptional activation, subunit 8, 34kDa protein.
          Length = 311

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 738 VLLRINSLVAEFQVSLSRPNG-DACTVETTGSADAIVTITRDEIFTEETI 884
           V+ RI+ +  E  + LSRPNG  A  + T G    ++ + R  +F + TI
Sbjct: 165 VISRIDRMFPEMSIHLSRPNGTSAMLLVTLGKVLKVIVVMR-SLFIDRTI 213


>AL603649-2|CAH72529.2|  311|Homo sapiens cofactor required for Sp1
           transcriptional activation, subunit 8, 34kDa protein.
          Length = 311

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 738 VLLRINSLVAEFQVSLSRPNG-DACTVETTGSADAIVTITRDEIFTEETI 884
           V+ RI+ +  E  + LSRPNG  A  + T G    ++ + R  +F + TI
Sbjct: 165 VISRIDRMFPEMSIHLSRPNGTSAMLLVTLGKVLKVIVVMR-SLFIDRTI 213


>AL513102-2|CAH72546.2|  311|Homo sapiens cofactor required for Sp1
           transcriptional activation, subunit 8, 34kDa protein.
          Length = 311

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 738 VLLRINSLVAEFQVSLSRPNG-DACTVETTGSADAIVTITRDEIFTEETI 884
           V+ RI+ +  E  + LSRPNG  A  + T G    ++ + R  +F + TI
Sbjct: 165 VISRIDRMFPEMSIHLSRPNGTSAMLLVTLGKVLKVIVVMR-SLFIDRTI 213


>AL160271-7|CAI13386.2|  311|Homo sapiens cofactor required for Sp1
           transcriptional activation, subunit 8, 34kDa protein.
          Length = 311

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 738 VLLRINSLVAEFQVSLSRPNG-DACTVETTGSADAIVTITRDEIFTEETI 884
           V+ RI+ +  E  + LSRPNG  A  + T G    ++ + R  +F + TI
Sbjct: 165 VISRIDRMFPEMSIHLSRPNGTSAMLLVTLGKVLKVIVVMR-SLFIDRTI 213


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,588,335
Number of Sequences: 237096
Number of extensions: 2506319
Number of successful extensions: 5569
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5569
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)