Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A12
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.7  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   8.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 682 EKEVDXASSKPLHVSVSTILFSTLM*RGFKETGIQTLITR 563
           EKEV+ A  KPL      + FSTL   G     ++TL+ R
Sbjct: 707 EKEVEKALLKPLLSLEDLVRFSTL--EGSGGDSLRTLLQR 744



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 428 QVAILGHYHLELKEYHLEWFSLIIDNRPHQNE 333
           Q  +  H+HL+   +HL+  ++   +RP+Q +
Sbjct: 135 QETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQ 166


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 524 LVQHPHWKGPLHQLGVEFFLGLDSWS 447
           LV  P W+  L+   VE  LG + WS
Sbjct: 902 LVTFPVWQVTLNARLVELSLGSNPWS 927


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +2

Query: 155 VVALPRRKSRVKSYLHERFGLGSTLTRKTTNALSSQSVGSGG 280
           + +LP   + + S   E+  +    T+ TTN  + ++   GG
Sbjct: 856 ITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNIGG 897


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 662 CXVDLFLGTLGLLNVDEVFS 721
           C VD  L  +G +N D  F+
Sbjct: 61  CYVDCMLKKVGFVNADTTFN 80


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 404 HLELKEYHLEWFSLIIDNRPH 342
           +LE+K Y+++W   I+ +  +
Sbjct: 101 NLEIKNYNIDWDKCILSSESY 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,392
Number of Sequences: 438
Number of extensions: 4967
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)