Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_A08
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 259 4e-70
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 141 1e-34
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 137 2e-33
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 119 6e-28
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 6.2
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 26 8.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 259 bits (634), Expect = 4e-70
Identities = 123/199 (61%), Positives = 148/199 (74%)
Frame = +1
Query: 178 DPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQL 357
D G+Y GTS+ Q ER++VY+NEA+ GGKYVPRA+L+DLEPGTMDAV+SG +G L
Sbjct: 31 DSAGIYHGTSEAQHERLNVYFNEAA------GGKYVPRAVLVDLEPGTMDAVKSGKFGNL 84
Query: 358 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXX 537
FRPDN ++GQSGAGN WAKGHYTEGAEL DAVLDVVR+E E CD LQGFQ
Sbjct: 85 FRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTG 144
Query: 538 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDN 717
KIREEYPDR+M T+SV P+PK SDTVVEPYNA LS+HQLVEN+DET+CIDN
Sbjct: 145 SGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDN 204
Query: 718 EXPLRYLLQDSXGYRTPTY 774
E L + ++ ++P+Y
Sbjct: 205 E-ALSSIFANTLKIKSPSY 222
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 141 bits (341), Expect = 1e-34
Identities = 68/175 (38%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Frame = +1
Query: 202 TSDLQLERISVYYNEA-SVATAESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNF 375
T + ++ + + Y N+ +E+G GK+VPR+I +DLEP +D VR+G Y LF P+
Sbjct: 37 TENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQM 96
Query: 376 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXX 555
V G+ A NN+A+GHYT G E++D+VL+ +R+ +NC LQGF
Sbjct: 97 VTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGAL 156
Query: 556 XXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 720
++ EY + +SV P+P+VS +VVEPYN+VL+ H ++N+D T+ +DNE
Sbjct: 157 LLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNE 211
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 137 bits (331), Expect = 2e-33
Identities = 66/154 (42%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Frame = +1
Query: 262 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 438
+E+G GKYVPR+I +DLEP +D VR+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKE 113
Query: 439 LVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 618
LVD V D +R+ +NC LQGF ++ EY + +SV P
Sbjct: 114 LVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYP 173
Query: 619 SPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNE 720
+P+VS +VVEPYN+VL+ H ++ D T+ +DNE
Sbjct: 174 APQVSTSVVEPYNSVLTTHATLDLADCTFMVDNE 207
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 119 bits (286), Expect = 6e-28
Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Frame = +1
Query: 277 KYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDA 450
+Y+PRAIL+DLEP ++ + S YG L+ P+N + ++ GAGNNWA G Y+ + +
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 451 VLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPK 627
++D++ +E + D L+GF ++ + YP +I+ TYSV P S
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQS 177
Query: 628 VSDTVVEPYNAVLSIHQLVENTDETYCIDNEXPLRYLLQDSXGYRTPTY 774
VSD VV+PYN++L++ +L N D +DN L ++ D + PT+
Sbjct: 178 VSDVVVQPYNSLLALKRLTLNADSVVVLDN-AALAHIAADRLHTQNPTF 225
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 409 AKGHYTEGAELVDAVLDVVRKECENCDCLQ 498
A+GH G ELV A D +RK+ EN L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 199 GTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLE 312
G+SD+ + +S + EAS + S VP+ +L D +
Sbjct: 49 GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQ 86
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 654 QRSSLHPSTSREYRRNLLHRQRG 722
Q SSLHPS+SR + + H RG
Sbjct: 201 QLSSLHPSSSRRHLISTPHVNRG 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,958
Number of Sequences: 5004
Number of extensions: 45606
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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