Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_A08
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 277 6e-75
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 276 2e-74
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 275 3e-74
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 274 5e-74
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 274 6e-74
03_01_0034 + 318432-318825,318902-319851 270 1e-72
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 253 2e-67
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 250 1e-66
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 143 2e-34
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 141 8e-34
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 140 1e-33
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 116 3e-26
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 103 2e-22
09_04_0325 + 16689613-16689772,16690043-16690329 32 0.70
04_03_0856 + 20336390-20336906,20337276-20337397 28 8.6
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 277 bits (680), Expect = 6e-75
Identities = 136/200 (68%), Positives = 151/200 (75%)
Frame = +1
Query: 178 DPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQL 357
D TG Y G SDLQLERI+VYYNEAS GG+YVPRA+L+DLEPGTMD+VRSG YGQ+
Sbjct: 31 DHTGKYSGDSDLQLERINVYYNEAS------GGRYVPRAVLMDLEPGTMDSVRSGPYGQI 84
Query: 358 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXX 537
FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ
Sbjct: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144
Query: 538 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDN 717
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 718 EXPLRYLLQDSXGYRTPTYG 777
E L + + TPT+G
Sbjct: 205 E-ALYDICFRTLKLATPTFG 223
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 276 bits (676), Expect = 2e-74
Identities = 135/200 (67%), Positives = 151/200 (75%)
Frame = +1
Query: 178 DPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQL 357
D TG Y G SDLQLERI+VYYNEAS GG+YVPRA+L+DLEPGTMD+VRSG +GQ+
Sbjct: 31 DATGRYAGDSDLQLERINVYYNEAS------GGRYVPRAVLMDLEPGTMDSVRSGPFGQI 84
Query: 358 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXX 537
FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ
Sbjct: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144
Query: 538 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDN 717
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 718 EXPLRYLLQDSXGYRTPTYG 777
E L + + TPT+G
Sbjct: 205 E-ALYDICFRTLKLATPTFG 223
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 275 bits (675), Expect = 3e-74
Identities = 133/200 (66%), Positives = 152/200 (76%)
Frame = +1
Query: 178 DPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQL 357
DPTG Y GTSDLQLER++VYYNEAS G++VPRA+L+DLEPGTMD+VR+G YGQ+
Sbjct: 211 DPTGRYAGTSDLQLERVNVYYNEASC------GRFVPRAVLMDLEPGTMDSVRTGPYGQI 264
Query: 358 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXX 537
FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ
Sbjct: 265 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 324
Query: 538 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDN 717
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DN
Sbjct: 325 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 384
Query: 718 EXPLRYLLQDSXGYRTPTYG 777
E L + + TP++G
Sbjct: 385 E-ALYDICFRTLKLTTPSFG 403
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 274 bits (673), Expect = 5e-74
Identities = 133/200 (66%), Positives = 152/200 (76%)
Frame = +1
Query: 178 DPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQL 357
DPTG Y GTSDLQLER++VYYNEAS G++VPRA+L+DLEPGTMD+VR+G YGQ+
Sbjct: 31 DPTGRYVGTSDLQLERVNVYYNEASC------GRFVPRAVLMDLEPGTMDSVRTGPYGQI 84
Query: 358 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXX 537
FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ
Sbjct: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144
Query: 538 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDN 717
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 718 EXPLRYLLQDSXGYRTPTYG 777
E L + + TP++G
Sbjct: 205 E-ALYDICFRTLKLTTPSFG 223
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 274 bits (672), Expect = 6e-74
Identities = 134/200 (67%), Positives = 151/200 (75%)
Frame = +1
Query: 178 DPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQL 357
D TG Y G SDLQLERI+VYYNEAS GG++VPRA+L+DLEPGTMD+VRSG +GQ+
Sbjct: 31 DHTGKYSGDSDLQLERINVYYNEAS------GGRFVPRAVLMDLEPGTMDSVRSGPFGQI 84
Query: 358 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXX 537
FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ
Sbjct: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144
Query: 538 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDN 717
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 718 EXPLRYLLQDSXGYRTPTYG 777
E L + + TPT+G
Sbjct: 205 E-ALYDICFRTLKLATPTFG 223
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 270 bits (661), Expect = 1e-72
Identities = 132/200 (66%), Positives = 149/200 (74%)
Frame = +1
Query: 178 DPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQL 357
D TG Y G SDLQLER++VYYNEAS G++VPRA+L+DLEPGTMD+VRSG YG +
Sbjct: 31 DATGRYDGDSDLQLERVNVYYNEASC------GRFVPRAVLMDLEPGTMDSVRSGPYGHI 84
Query: 358 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXX 537
FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DAVLDVVRKE ENCDCLQGFQ
Sbjct: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144
Query: 538 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDN 717
KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 718 EXPLRYLLQDSXGYRTPTYG 777
E L + + TP++G
Sbjct: 205 E-ALYDICFRTLKLTTPSFG 223
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 253 bits (619), Expect = 2e-67
Identities = 132/221 (59%), Positives = 151/221 (68%), Gaps = 21/221 (9%)
Frame = +1
Query: 178 DPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQL 357
DPTG Y G SDLQLER++VYYNEAS G++VPRA+L+DLEPGTMD+VR+G YGQ+
Sbjct: 31 DPTGRYTGNSDLQLERVNVYYNEASC------GRFVPRAVLMDLEPGTMDSVRTGPYGQI 84
Query: 358 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQ------------- 498
FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQ
Sbjct: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGCRRLLEVHPLTC 144
Query: 499 --------GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPY 654
GFQ KIREEYPDR+M T+SV PSPKVSDTVVEPY
Sbjct: 145 CESRNMMHGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPY 204
Query: 655 NAVLSIHQLVENTDETYCIDNEXPLRYLLQDSXGYRTPTYG 777
NA LS+HQLVEN DE +DNE L + + TP++G
Sbjct: 205 NATLSVHQLVENADECMVLDNE-ALYDICFRTLKLTTPSFG 244
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 250 bits (611), Expect = 1e-66
Identities = 126/197 (63%), Positives = 141/197 (71%), Gaps = 16/197 (8%)
Frame = +1
Query: 178 DPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQL 357
DPTG Y GTS QLERI+VY+NEAS GG++VPRA+L+DLEPGTMD++RSG G +
Sbjct: 31 DPTGTYTGTSPQQLERINVYFNEAS------GGRHVPRAVLMDLEPGTMDSLRSGPIGGI 84
Query: 358 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECENCDCLQ------------- 498
FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQ
Sbjct: 85 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQDNRVIRQLGSIDN 144
Query: 499 ---GFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLS 669
GFQ KIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS
Sbjct: 145 EQSGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLS 204
Query: 670 IHQLVENTDETYCIDNE 720
+HQLVEN DE +DNE
Sbjct: 205 VHQLVENADECMVLDNE 221
Score = 32.7 bits (71), Expect = 0.40
Identities = 21/42 (50%), Positives = 24/42 (57%)
Frame = +2
Query: 725 LYDICYRTLXGTXPQRTAXLNHLXVP*PCSGXDDXALRFPGK 850
LYDIC+RTL T P LNHL + SG LRFPG+
Sbjct: 223 LYDICFRTLKLTNPS-FGDLNHL-ISATMSGV-TCCLRFPGQ 261
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 143 bits (346), Expect = 2e-34
Identities = 74/184 (40%), Positives = 107/184 (58%), Gaps = 1/184 (0%)
Frame = +1
Query: 226 ISVYYNEASVATAESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGN 402
+ V ++ + +E+G GK+VPRAI +DLEP +D VR+G+Y QLF P+ + G+ A N
Sbjct: 42 VGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAAN 101
Query: 403 NWAKGHYTEGAELVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEY 582
N+A+GHYT G E+VD LD VRK +NC LQGF ++ +Y
Sbjct: 102 NFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161
Query: 583 PDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEXPLRYLLQDSXGYR 762
+ +++ PSP+VS VVEPYN+VLS H L+E+TD +DNE + + + S
Sbjct: 162 GKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNE-AIYDICRRSLDIE 220
Query: 763 TPTY 774
PTY
Sbjct: 221 RPTY 224
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 141 bits (341), Expect = 8e-34
Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 1/172 (0%)
Frame = +1
Query: 262 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 438
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGCYRQLFHPEQLINGKEDAANNFARGHYTIGKE 113
Query: 439 LVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 618
+VD LD +RK +NC LQGF ++ +Y + ++V P
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173
Query: 619 SPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEXPLRYLLQDSXGYRTPTY 774
SP+VS +VVEPYN+VLS H L+E+TD +DNE + + + S PTY
Sbjct: 174 SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNE-AIYDICRRSLDIERPTY 224
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 140 bits (340), Expect = 1e-33
Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 1/172 (0%)
Frame = +1
Query: 262 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 438
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
Query: 439 LVDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 618
+VD LD +RK +NC LQGF ++ +Y + ++V P
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173
Query: 619 SPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEXPLRYLLQDSXGYRTPTY 774
SP+VS +VVEPYN+VLS H L+E+TD +DNE + + + S PTY
Sbjct: 174 SPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNE-AIYDICRRSLDIERPTY 224
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 116 bits (279), Expect = 3e-26
Identities = 68/190 (35%), Positives = 97/190 (51%), Gaps = 21/190 (11%)
Frame = +1
Query: 268 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 447
S GK+VPRA+ +DLEP +D V++G Y QLF P+ + + A NN+A+GHYT G E+VD
Sbjct: 117 SSGKHVPRALFVDLEPTVIDEVKTGPYRQLFHPEQLISYKEDAANNFARGHYTVGREVVD 176
Query: 448 AVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP- 624
LD +RK +NC LQGF ++ +Y + +++ PSP
Sbjct: 177 LCLDRLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTIYPSPQ 236
Query: 625 --------------------KVSDTVVEPYNAVLSIHQLVENTDETYCIDNEXPLRYLLQ 744
K+S VVEPYN+VLS H L+E+TD +DNE + + +
Sbjct: 237 YFFMSSSCMHIMSDTQISQCKISTAVVEPYNSVLSTHSLIEHTDVVVLLDNE-AIYDICK 295
Query: 745 DSXGYRTPTY 774
S PTY
Sbjct: 296 RSLDIERPTY 305
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 103 bits (247), Expect = 2e-22
Identities = 49/149 (32%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Frame = +1
Query: 280 YVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAV 453
Y+PRA+L+DLEP ++ +++ Y L+ +N + GAGNNWA G Y +G ++VD +
Sbjct: 60 YIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDI 118
Query: 454 LDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP-KV 630
+D++ +E + D L+GF + + Y +++ TYSV P+ +
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMET 178
Query: 631 SDTVVEPYNAVLSIHQLVENTDETYCIDN 717
SD VV+PYN++L++ +L N D +DN
Sbjct: 179 SDVVVQPYNSLLTLKRLTLNADCVVVLDN 207
>09_04_0325 + 16689613-16689772,16690043-16690329
Length = 148
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/29 (62%), Positives = 19/29 (65%), Gaps = 6/29 (20%)
Frame = +1
Query: 343 AYGQLFR-----PDNFVFGQSGAGN-NWA 411
AY Q+FR PDNFVF QS AG NWA
Sbjct: 119 AYSQIFRLPRFNPDNFVFHQSVAGGINWA 147
>04_03_0856 + 20336390-20336906,20337276-20337397
Length = 212
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 416 PLAQLLPAPDWPKTKLSGRK 357
PL P P+WP KL+GRK
Sbjct: 30 PLPFASPPPEWPAGKLAGRK 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,747,688
Number of Sequences: 37544
Number of extensions: 342733
Number of successful extensions: 978
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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