Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A08
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.099
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.53 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.53 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.92 

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.3 bits (60), Expect = 0.099
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 585 RQNHEHILSSPLAQSIRHRRRTIQRSSLHPSTSREYRRNLLHRQRGPFT 731
           +Q H H  + P AQ+    ++  Q+    P   ++ ++    +QRGP T
Sbjct: 812 QQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMT 860


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 721  PRCLCSKFRLYSRLVDGWREL 659
            P  + +K+ LY+R+VDG  EL
Sbjct: 1240 PNGIITKYNLYTRVVDGREEL 1260


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 721  PRCLCSKFRLYSRLVDGWREL 659
            P  + +K+ LY+R+VDG  EL
Sbjct: 1236 PNGIITKYNLYTRVVDGREEL 1256


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 625  KVSDTVVEPYNAVLSIHQLVENTDETYCIDNEXPLRYLLQDS 750
            K +D +V+  ++       +  + E+ C  ++ P  YLL+DS
Sbjct: 944  KQNDYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDS 985


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,733
Number of Sequences: 438
Number of extensions: 3360
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)