Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_A04
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    29   0.88 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   2.0  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   6.2  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 674 RWVNDLGHVDLGNVGRQYWLVSL 606
           R+ +D G +DLG +G + WLV +
Sbjct: 15  RYEDDAGDLDLGQIGSRVWLVKI 37


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 462  PQSEELLHITP-ELETERHSERQNRALYISKTVIITTPHPLAKNITLNNQTDEPILATNV 638
            P  E+    TP EL  + HS+        S+      PH  A+N    + T+ P++ TNV
Sbjct: 980  PSLEKTDQSTPVELLIDSHSQNSQNEEKRSRMKFWAFPHHKAENYEQISDTNIPVIETNV 1039


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 469 DWGAPKADSLPRRISSIVTQNQCIHQCSVMMA 374
           DW   K  S P RI +I      +HQ  V +A
Sbjct: 250 DWWRAKVGSFPDRIENIFFNYALLHQALVQIA 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,023
Number of Sequences: 5004
Number of extensions: 66647
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)